Skip to content

Commit

Permalink
deploy: 95c4c78
Browse files Browse the repository at this point in the history
  • Loading branch information
smiet committed Dec 12, 2024
1 parent 55a16e6 commit f4fa0e8
Show file tree
Hide file tree
Showing 397 changed files with 32,666 additions and 30,744 deletions.
Binary file added SPEC_flowchart.pdf
Binary file not shown.
Binary file modified SPEC_manual.pdf
Binary file not shown.
4 changes: 2 additions & 2 deletions basefn_8f90_a29cbf901a18ead65d0e3a51956a3f045_icgraph.map
Original file line number Diff line number Diff line change
Expand Up @@ -13,9 +13,9 @@
<area shape="rect" id="node10" href="$group__grp__force__driver.html#gaec14f81fbdbedafbc4189489ec8ae178" title="Employs Newton method to find , where &#160;and &#160;is defined in dforce() ." alt="" coords="306,344,370,371"/>
<area shape="rect" id="node11" href="$group__grp__force__driver.html#ga8ccd6c7d901872702521d0a0edf95412" title="Objective to be given to the Newton solver, using function values and derivatives." alt="" coords="10,295,56,321"/>
<area shape="rect" id="node13" href="$dfp200_8f90.html#a6aca59cf350d7b1941f8389d50945a43" title="get LU Beltrami matrices" alt="" coords="418,181,584,208"/>
<area shape="rect" id="node18" href="$group__grp__diagnostics.html#ga7401b50ec10c6598ee4a8112717a63ec" title="Computes eigenvalues and eigenvectors of derivative matrix, ." alt="" coords="471,29,531,56"/>
<area shape="rect" id="node18" href="$group__grp__output.html#ga7401b50ec10c6598ee4a8112717a63ec" title="Computes eigenvalues and eigenvectors of derivative matrix, &#160;and saves them to .ext...." alt="" coords="471,29,531,56"/>
<area shape="rect" id="node19" href="$group__grp__conjugate__gradient.html#ga4d8415226e62a9fdb42b0fd0b464251e" title="Returns the energy functional and it&#39;s derivatives with respect to geometry." alt="" coords="469,256,533,283"/>
<area shape="rect" id="node12" href="$group__grp__force__driver.html#ga382822b303cbf8c56d6f54dcb379caf2" title="read or write force&#45;derivative matrix" alt="" coords="138,357,224,384"/>
<area shape="rect" id="node12" href="$group__grp__output.html#ga382822b303cbf8c56d6f54dcb379caf2" title="read or write force&#45;derivative matrix .ext.sp.DF" alt="" coords="138,357,224,384"/>
<area shape="rect" id="node14" href="$dfp200_8f90.html#a55ea75395f8c71731451e1add3720c7e" title="Given the field consistent with the constraints and the geometry, computes local quantites related to..." alt="" coords="307,181,368,208"/>
<area shape="rect" id="node15" href="$dfp200_8f90.html#a7b64c7392b45d0042d8bd7379c0761a5" title="Evaluate the derivative of the square of the magnetic field modulus. Add spectral constraint derivati..." alt="" coords="132,131,230,157"/>
<area shape="rect" id="node16" href="$dfp200_8f90.html#a73ddf39ecc5228201fb643779e17cd36" title="Evaluate mu and psip derivatives and store them in dmupfdx." alt="" coords="118,181,244,208"/>
Expand Down
2 changes: 1 addition & 1 deletion basefn_8f90_a29cbf901a18ead65d0e3a51956a3f045_icgraph.md5
Original file line number Diff line number Diff line change
@@ -1 +1 @@
4c9d9a1bcfbde4146f74ef0c2a28082c
0d71e74676407d4bd9031a4aafb85d42
4 changes: 2 additions & 2 deletions basefn_8f90_a29cbf901a18ead65d0e3a51956a3f045_icgraph.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
6 changes: 3 additions & 3 deletions basefn_8f90_a38dc596fb909186b01dacc1feac03164_icgraph.map
Original file line number Diff line number Diff line change
Expand Up @@ -20,16 +20,16 @@
<area shape="rect" id="node11" href="$group__grp__force__driver.html#gaec14f81fbdbedafbc4189489ec8ae178" title="Employs Newton method to find , where &#160;and &#160;is defined in dforce() ." alt="" coords="306,217,370,244"/>
<area shape="rect" id="node12" href="$group__grp__force__driver.html#ga8ccd6c7d901872702521d0a0edf95412" title="Objective to be given to the Newton solver, using function values and derivatives." alt="" coords="10,217,56,244"/>
<area shape="rect" id="node14" href="$dfp200_8f90.html#a6aca59cf350d7b1941f8389d50945a43" title="get LU Beltrami matrices" alt="" coords="418,525,584,552"/>
<area shape="rect" id="node19" href="$group__grp__diagnostics.html#ga7401b50ec10c6598ee4a8112717a63ec" title="Computes eigenvalues and eigenvectors of derivative matrix, ." alt="" coords="471,72,531,98"/>
<area shape="rect" id="node19" href="$group__grp__output.html#ga7401b50ec10c6598ee4a8112717a63ec" title="Computes eigenvalues and eigenvectors of derivative matrix, &#160;and saves them to .ext...." alt="" coords="471,72,531,98"/>
<area shape="rect" id="node20" href="$group__grp__conjugate__gradient.html#ga4d8415226e62a9fdb42b0fd0b464251e" title="Returns the energy functional and it&#39;s derivatives with respect to geometry." alt="" coords="469,373,533,400"/>
<area shape="rect" id="node13" href="$group__grp__force__driver.html#ga382822b303cbf8c56d6f54dcb379caf2" title="read or write force&#45;derivative matrix" alt="" coords="138,248,224,274"/>
<area shape="rect" id="node13" href="$group__grp__output.html#ga382822b303cbf8c56d6f54dcb379caf2" title="read or write force&#45;derivative matrix .ext.sp.DF" alt="" coords="138,248,224,274"/>
<area shape="rect" id="node15" href="$dfp200_8f90.html#a55ea75395f8c71731451e1add3720c7e" title="Given the field consistent with the constraints and the geometry, computes local quantites related to..." alt="" coords="307,562,368,589"/>
<area shape="rect" id="node16" href="$dfp200_8f90.html#a7b64c7392b45d0042d8bd7379c0761a5" title="Evaluate the derivative of the square of the magnetic field modulus. Add spectral constraint derivati..." alt="" coords="132,562,230,589"/>
<area shape="rect" id="node17" href="$dfp200_8f90.html#a73ddf39ecc5228201fb643779e17cd36" title="Evaluate mu and psip derivatives and store them in dmupfdx." alt="" coords="118,626,244,653"/>
<area shape="rect" id="node18" href="$dfp200_8f90.html#a5e56f1f4b1e6df11a9cffa6237c37469" title="This routine evaluates the value of the magnetic field once the interface is perturbed using matrix p..." alt="" coords="104,512,258,538"/>
<area shape="rect" id="node21" href="$group__grp__conjugate__gradient.html#ga25a3bae2ff2ee0469b045de0d033398b" title="Use preconditioned conjugate gradient method to find minimum of energy functional." alt="" coords="306,373,370,400"/>
<area shape="rect" id="node25" href="$group__grp__diagnostics.html#gad67931244268a09bd077dae8910c7096" title="Constructs Poincaré plot and &quot;approximate&quot; rotational&#45;transform (driver)." alt="" coords="1340,248,1404,274"/>
<area shape="rect" id="node28" href="$intghs_8f90.html#ae10091a51178071d12004da4952104d4" title="free workspace" alt="" coords="939,600,1115,626"/>
<area shape="rect" id="node28" href="$intghs_8f90.html#ae10091a51178071d12004da4952104d4" title="free workspace." alt="" coords="939,600,1115,626"/>
<area shape="rect" id="node30" href="$intghs_8f90.html#ae8299d4625cabd90eb1398fd2cd38089" title="init workspace" alt="" coords="952,776,1102,802"/>
<area shape="rect" id="node31" href="$mp00ac_8f90.html#ae9fe335bb4916face9f9d19ce8c0f5d7" title="compute a.x by either by coumputing it directly, or using a matrix free method" alt="" coords="1476,650,1542,677"/>
<area shape="rect" id="node33" href="$group__grp__solver.html#ga6626839aff500f060beb5bce2b90c447" title="Solves Beltrami/vacuum (linear) system, given matrices.unpacking fluxes, helicity multiplier" alt="" coords="1190,674,1258,701"/>
Expand Down
2 changes: 1 addition & 1 deletion basefn_8f90_a38dc596fb909186b01dacc1feac03164_icgraph.md5
Original file line number Diff line number Diff line change
@@ -1 +1 @@
9e27cf5c1c27290b547325797202e465
5ded083b68e66a66e0478e8ce6823a93
6 changes: 3 additions & 3 deletions basefn_8f90_a38dc596fb909186b01dacc1feac03164_icgraph.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions basefn_8f90_a6076d695487184d58d30d73de2f6470f_icgraph.map
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
<map id="get_zernike_rm" name="get_zernike_rm">
<area shape="rect" id="node1" title="Get the Zernike polynomials ." alt="" coords="1119,55,1230,81"/>
<area shape="rect" id="node2" href="$group__grp__initialization.html#ga28628de0fdb3b3497668007d8d0643bd" title="Allocates and initializes internal arrays." alt="" coords="1012,55,1071,81"/>
<area shape="rect" id="node3" href="$group__grp__diagnostics.html#ga7401b50ec10c6598ee4a8112717a63ec" title="Computes eigenvalues and eigenvectors of derivative matrix, ." alt="" coords="904,168,964,195"/>
<area shape="rect" id="node3" href="$group__grp__output.html#ga7401b50ec10c6598ee4a8112717a63ec" title="Computes eigenvalues and eigenvectors of derivative matrix, &#160;and saves them to .ext...." alt="" coords="904,168,964,195"/>
<area shape="rect" id="node7" href="$xspech_8f90.html#a9fdc71dffd7c61ee4588a3f80d3ab9ce" title="Main subroutine of SPEC." alt="" coords="306,55,369,81"/>
<area shape="rect" id="node4" href="$xspech_8f90.html#a48f45478dc2c9f70ea8aa1c60ad06503" title="This is the main &quot;driver&quot; for the physics part of SPEC." alt="" coords="806,168,856,195"/>
<area shape="rect" id="node5" href="$group__grp__global__force.html#ga38c9d3c50bd043707fefa5137c9dbf44" title="Calculates , where &#160;and , and ." alt="" coords="666,319,724,345"/>
Expand All @@ -14,7 +14,7 @@
<area shape="rect" id="node19" href="$group__grp__conjugate__gradient.html#ga4d8415226e62a9fdb42b0fd0b464251e" title="Returns the energy functional and it&#39;s derivatives with respect to geometry." alt="" coords="469,469,533,496"/>
<area shape="rect" id="node8" href="$xspech_8f90.html#a1451823a7b97101a797de616250752c1" title="Final diagnostics." alt="" coords="122,55,240,81"/>
<area shape="rect" id="node9" href="$xspech_8f90.html#a95271e8805067f801b5d4e524d6901d4" title="Main program of SPEC." alt="" coords="138,105,224,132"/>
<area shape="rect" id="node13" href="$group__grp__force__driver.html#ga382822b303cbf8c56d6f54dcb379caf2" title="read or write force&#45;derivative matrix" alt="" coords="138,269,224,296"/>
<area shape="rect" id="node13" href="$group__grp__output.html#ga382822b303cbf8c56d6f54dcb379caf2" title="read or write force&#45;derivative matrix .ext.sp.DF" alt="" coords="138,269,224,296"/>
<area shape="rect" id="node15" href="$dfp200_8f90.html#a55ea75395f8c71731451e1add3720c7e" title="Given the field consistent with the constraints and the geometry, computes local quantites related to..." alt="" coords="307,571,368,597"/>
<area shape="rect" id="node16" href="$dfp200_8f90.html#a7b64c7392b45d0042d8bd7379c0761a5" title="Evaluate the derivative of the square of the magnetic field modulus. Add spectral constraint derivati..." alt="" coords="132,621,230,648"/>
<area shape="rect" id="node17" href="$dfp200_8f90.html#a73ddf39ecc5228201fb643779e17cd36" title="Evaluate mu and psip derivatives and store them in dmupfdx." alt="" coords="118,520,244,547"/>
Expand Down
2 changes: 1 addition & 1 deletion basefn_8f90_a6076d695487184d58d30d73de2f6470f_icgraph.md5
Original file line number Diff line number Diff line change
@@ -1 +1 @@
9d110ea7a4ef9457ef061a6b4d12b203
a237c73a7e86159d25305d0b92cc51f1
4 changes: 2 additions & 2 deletions basefn_8f90_a6076d695487184d58d30d73de2f6470f_icgraph.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions basefn_8f90_a8f42498fd0b4c464c8c2d3ce0e94c56a_icgraph.map
Original file line number Diff line number Diff line change
Expand Up @@ -13,9 +13,9 @@
<area shape="rect" id="node10" href="$group__grp__force__driver.html#gaec14f81fbdbedafbc4189489ec8ae178" title="Employs Newton method to find , where &#160;and &#160;is defined in dforce() ." alt="" coords="306,344,370,371"/>
<area shape="rect" id="node11" href="$group__grp__force__driver.html#ga8ccd6c7d901872702521d0a0edf95412" title="Objective to be given to the Newton solver, using function values and derivatives." alt="" coords="10,295,56,321"/>
<area shape="rect" id="node13" href="$dfp200_8f90.html#a6aca59cf350d7b1941f8389d50945a43" title="get LU Beltrami matrices" alt="" coords="418,181,584,208"/>
<area shape="rect" id="node18" href="$group__grp__diagnostics.html#ga7401b50ec10c6598ee4a8112717a63ec" title="Computes eigenvalues and eigenvectors of derivative matrix, ." alt="" coords="471,29,531,56"/>
<area shape="rect" id="node18" href="$group__grp__output.html#ga7401b50ec10c6598ee4a8112717a63ec" title="Computes eigenvalues and eigenvectors of derivative matrix, &#160;and saves them to .ext...." alt="" coords="471,29,531,56"/>
<area shape="rect" id="node19" href="$group__grp__conjugate__gradient.html#ga4d8415226e62a9fdb42b0fd0b464251e" title="Returns the energy functional and it&#39;s derivatives with respect to geometry." alt="" coords="469,256,533,283"/>
<area shape="rect" id="node12" href="$group__grp__force__driver.html#ga382822b303cbf8c56d6f54dcb379caf2" title="read or write force&#45;derivative matrix" alt="" coords="138,357,224,384"/>
<area shape="rect" id="node12" href="$group__grp__output.html#ga382822b303cbf8c56d6f54dcb379caf2" title="read or write force&#45;derivative matrix .ext.sp.DF" alt="" coords="138,357,224,384"/>
<area shape="rect" id="node14" href="$dfp200_8f90.html#a55ea75395f8c71731451e1add3720c7e" title="Given the field consistent with the constraints and the geometry, computes local quantites related to..." alt="" coords="307,181,368,208"/>
<area shape="rect" id="node15" href="$dfp200_8f90.html#a7b64c7392b45d0042d8bd7379c0761a5" title="Evaluate the derivative of the square of the magnetic field modulus. Add spectral constraint derivati..." alt="" coords="132,131,230,157"/>
<area shape="rect" id="node16" href="$dfp200_8f90.html#a73ddf39ecc5228201fb643779e17cd36" title="Evaluate mu and psip derivatives and store them in dmupfdx." alt="" coords="118,181,244,208"/>
Expand Down
2 changes: 1 addition & 1 deletion basefn_8f90_a8f42498fd0b4c464c8c2d3ce0e94c56a_icgraph.md5
Original file line number Diff line number Diff line change
@@ -1 +1 @@
6963c71cb16de427571d2d4243c7986d
ff77e89d34ee48d21b9d7e39e37da188
4 changes: 2 additions & 2 deletions basefn_8f90_a8f42498fd0b4c464c8c2d3ce0e94c56a_icgraph.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading

0 comments on commit f4fa0e8

Please sign in to comment.