Add ultrasound confidence map to transforms (#6709) #1699
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| # this is the docker image releasing pipeline, pushing to https://hub.docker.com/r/projectmonai/monai | |
| name: docker | |
| # versioning: compute a static version file | |
| # local_docker: use the version file to build docker images | |
| # docker_test_latest: test the latest internal docker image (has flake) | |
| # docker_test_dockerhub: test the latest dockerhub release (no flake) | |
| on: | |
| # dev only docker deployment and quick tests | |
| push: | |
| branches: | |
| - dev | |
| # Allows you to run this workflow manually from the Actions tab | |
| # This is to trigger building/testing docker image from dev only. | |
| workflow_dispatch: | |
| jobs: | |
| versioning_dev: | |
| # compute versioning file from python setup.py | |
| # upload as artifact | |
| if: github.repository == 'Project-MONAI/MONAI' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| # full history so that we can git describe | |
| with: | |
| ref: dev | |
| fetch-depth: 0 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - shell: bash | |
| run: | | |
| git describe | |
| python -m pip install -U pip wheel setuptools | |
| python setup.py build | |
| cat build/lib/monai/_version.py | |
| - name: Upload version | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: _version.py | |
| path: build/lib/monai/_version.py | |
| - name: Clean up directory | |
| shell: bash | |
| run: | | |
| ls -al | |
| rm -rf {*,.[^.]*} | |
| docker_build_dev: | |
| # builds projectmonai/monai:latest | |
| if: github.repository == 'Project-MONAI/MONAI' | |
| needs: versioning_dev | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| ref: dev | |
| - name: Download version | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: _version.py | |
| - name: docker_build | |
| shell: bash | |
| run: | | |
| rm -rf /opt/hostedtoolcache | |
| docker --version | |
| # get tag info for versioning | |
| cat _version.py | |
| mv _version.py monai/ | |
| # build "latest": remove flake package as it is not needed on hub.docker.com | |
| sed -i '/flake/d' requirements-dev.txt | |
| docker build -t projectmonai/monai:latest -f Dockerfile . | |
| # distribute as always w/ tag "latest" to hub.docker.com | |
| echo "${{ secrets.DOCKER_PW }}" | docker login -u projectmonai --password-stdin | |
| docker push projectmonai/monai:latest | |
| docker logout | |
| docker image prune -f | |
| docker_test_dockerhub: | |
| if: github.repository == 'Project-MONAI/MONAI' | |
| needs: docker_build_dev | |
| container: | |
| image: docker://projectmonai/monai:latest | |
| options: "--shm-size=4g --ipc=host" | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Import | |
| run: | | |
| export CUDA_VISIBLE_DEVICES=$(python -m tests.utils | tail -n 1) | |
| echo $CUDA_VISIBLE_DEVICES | |
| python -c 'import monai; monai.config.print_debug_info()' | |
| cd /opt/monai | |
| ls -al | |
| ngc --version | |
| ./runtests.sh --min | |
| shell: bash | |
| env: | |
| QUICKTEST: True |