Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Geometric transform implementations #7955

Draft
wants to merge 31 commits into
base: dev
Choose a base branch
from
Draft

Geometric transform implementations #7955

wants to merge 31 commits into from

Commits on Apr 12, 2024

  1. Add kind property in MetaTensor (Project-MONAI#7488) 

    Part of Project-MONAI#7486


### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <[email protected]>
    @KumoLiu
    KumoLiu authored Apr 12, 2024
    Configuration menu
    Copy the full SHA
    00436d0 View commit details
    Browse the repository at this point in the history

Commits on Jul 11, 2024

  1. Adding apply_to_geometry function 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    b2ab07e View commit details
    Browse the repository at this point in the history

  2. Adding load_geometry function 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    7c7ec30 View commit details
    Browse the repository at this point in the history

  3. Adding missing import for apply_to_geometry 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    8077759 View commit details
    Browse the repository at this point in the history

  4. Adding KindKeys to __all__ in monai.utils.enums.py 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    7edb44e View commit details
    Browse the repository at this point in the history

  5. Adding tests for apply_to_geometry 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    61cb5c3 View commit details
    Browse the repository at this point in the history

  6. Adding apply_to_geometry to __all__ in lazy/functional.py 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    1e83ec8 View commit details
    Browse the repository at this point in the history

  7. Adding flip functionality for geometric_tensors 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    e503d6a View commit details
    Browse the repository at this point in the history

  8. Adding KindKeys to utils/__init__ 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    f345fc9 View commit details
    Browse the repository at this point in the history

  9. Adding | None to meta_info for apply_to_geometry 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    edc4bb7 View commit details
    Browse the repository at this point in the history

  10. Adding resize functionality for geometric tensors 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    b8baae9 View commit details
    Browse the repository at this point in the history

  11. Adding rotate functionality for geometric tensors 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    e59b4a9 View commit details
    Browse the repository at this point in the history

  12. Fixing line endings for monai/transforms/io/functional.py 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    a0b768e View commit details
    Browse the repository at this point in the history

Commits on Jul 19, 2024

  1. Fixed rotate to that output_shape is returned. Made resize consistent… 

    … with rotate

Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 19, 2024
    Configuration menu
    Copy the full SHA
    4e6ae70 View commit details
    Browse the repository at this point in the history

  2. Work towards geometry tests for rotate 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 19, 2024
    Configuration menu
    Copy the full SHA
    f763c8f View commit details
    Browse the repository at this point in the history

  3. Fixed KindKey types for flip functionality 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 19, 2024
    Configuration menu
    Copy the full SHA
    fc8e0b8 View commit details
    Browse the repository at this point in the history

Commits on Jul 26, 2024

  1. Fix to handle 2d data being multiplied by a 3d transform from the met… 

    …atensor api

Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    0857ac7 View commit details
    Browse the repository at this point in the history

  2. Bug fixes to make all related unit tests pass 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    aa83926 View commit details
    Browse the repository at this point in the history

  3. Removed ndims (not ndim) from MetaTensor 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    55edf77 View commit details
    Browse the repository at this point in the history

  4. Adding tests for rotate / flip 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    7928f32 View commit details
    Browse the repository at this point in the history

  5. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    1a216e9 View commit details
    Browse the repository at this point in the history

Commits on Aug 2, 2024

  1. load_geometry functionality and tests 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    7004598 View commit details
    Browse the repository at this point in the history

  2. Resolving conflict 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    51d8d28 View commit details
    Browse the repository at this point in the history

  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    62f506b View commit details
    Browse the repository at this point in the history

  4. Adding spatial_dims_from_tensorlike function to handle point tensors 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    4740533 View commit details
    Browse the repository at this point in the history

  5. Zoom modified to use spatial_dims_from_tensorlike 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    2ff1d73 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'geometric_all' of github.com:atbenmurray/monai into geo… 

    …metric_all
    @atbenmurray
    atbenmurray committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    c2d351f View commit details
    Browse the repository at this point in the history

  7. Added and tested point zoom functionality 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    645e0c6 View commit details
    Browse the repository at this point in the history

  8. Adding traced_no_op function for use in transforms that no-op geometr… 

    …y data (like Spacing)

Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    f2e2426 View commit details
    Browse the repository at this point in the history

  9. Adding geometry support to Spacing transform 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    4898b88 View commit details
    Browse the repository at this point in the history

  10. Adding save_geometry function plus test 

    Signed-off-by: Ben Murray <[email protected]>
    @atbenmurray
    atbenmurray committed Aug 2, 2024
    Configuration menu
    Copy the full SHA
    2cda79a View commit details
    Browse the repository at this point in the history