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@Public-Health-Bioinformatics

Public Health Bioinformatics

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  1. pubmlst_client pubmlst_client Public

    List and download schemes from pubMLST.org and other BIGSDB servers

    Python 8 5

  2. kipper kipper Public

    command line versioning tool for large key-value text files

    Python 6 2

  3. galaxy-tool-tutorials galaxy-tool-tutorials Public

    Galaxy tool training materials being developed for in-house workshops.

    4

  4. flu_classification_suite flu_classification_suite Public

    💉 📊 Flu Classification Suite

    Python 4 1

  5. ontofetch ontofetch Public

    Ontofetch is a command line tool to fetch branches of terms from a given local file or internet based ontology URL. This is output in JSON format, and includes term label, definition, broad, narrow…

    Python 3 2

  6. irida-plugin-snippy-phylogenomics irida-plugin-snippy-phylogenomics Public

    Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.

    Java 2 1

Repositories

Showing 10 of 44 repositories
  • pubmlst_client Public

    List and download schemes from pubMLST.org and other BIGSDB servers

    Public-Health-Bioinformatics/pubmlst_client’s past year of commit activity
    Python 8 MIT 5 0 1 Updated Oct 14, 2024
  • Public-Health-Bioinformatics/galaxy_tools’s past year of commit activity
    Python 0 1 0 0 Updated Sep 19, 2023
  • Public-Health-Bioinformatics/irida-plugin-tbprofiler’s past year of commit activity
    Java 1 Apache-2.0 1 1 0 Updated Sep 19, 2023
  • Public-Health-Bioinformatics/irida-plugin-tbprofiler-multisample’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Jul 13, 2023
  • irida-plugin-species-abundance Public

    Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system

    Public-Health-Bioinformatics/irida-plugin-species-abundance’s past year of commit activity
    Java 0 Apache-2.0 3 1 1 Updated Jun 2, 2023
  • Public-Health-Bioinformatics/compute_canada_cloud’s past year of commit activity
    0 0 0 0 Updated Apr 29, 2021
  • Public-Health-Bioinformatics/snakemake_demo’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Feb 25, 2021
  • decision-tree Public

    A question and answer web form system for exploring the research questions and datasets pertinent to an emerging infectious disease outbreak.

    Public-Health-Bioinformatics/decision-tree’s past year of commit activity
    Makefile 1 1 0 0 Updated Jan 15, 2021
  • irida-plugin-snippy-single Public

    Call SNPs and indels between a reference genome and your sequence data

    Public-Health-Bioinformatics/irida-plugin-snippy-single’s past year of commit activity
    Java 0 0 2 0 Updated Nov 20, 2020
  • irida-plugin-snippy-phylogenomics Public

    Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.

    Public-Health-Bioinformatics/irida-plugin-snippy-phylogenomics’s past year of commit activity
    Java 2 1 3 1 Updated Nov 20, 2020

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