Commits for new release

pyproject.toml

@@ -228,7 +228,7 @@ commands_pre =
 
 commands =
     - poetry show
-    poetry run pytest --cov=pyshacl test/
+    poetry run pytest -v --log-level=INFO --cov=pyshacl test/
     - poetry run coverage combine --append
     poetry run coverage report -m
     poetry run coverage html -i

pyshacl/assets/make_builtin.py

@@ -11,18 +11,25 @@
 with open("./schema.ttl", "rb") as f:
     g = Graph(store=store, identifier=identifier, bind_namespaces='core').parse(file=f)
 with open("./schema.pickle", "wb") as f:
-    pickle.dump((store, identifier), f, protocol=4)  # protocol 5 only works in python 3.8+
+    pickle.dump((store, identifier), f, protocol=5)
 
 identifier = URIRef("http://www.w3.org/ns/shacl#")
 store = Memory(identifier=identifier)
 with open("./shacl.ttl", "rb") as f:
     g = Graph(store=store, identifier=identifier, bind_namespaces='core').parse(file=f)
 with open("./shacl.pickle", "wb") as f:
-    pickle.dump((store, identifier), f, protocol=4)  # protocol 5 only works in python 3.8+
+    pickle.dump((store, identifier), f, protocol=5)
+
+identifier = URIRef("http://datashapes.org/dash")
+store = Memory(identifier=identifier)
+with open("./dash.ttl", "rb") as f:
+    g = Graph(store=store, identifier=identifier, bind_namespaces='core').parse(file=f)
+with open("./dash.pickle", "wb") as f:
+    pickle.dump((store, identifier), f, protocol=5)
 
 identifier = URIRef("http://www.w3.org/ns/shacl-shacl#")
 store = Memory(identifier=identifier)
 with open("./shacl-shacl.ttl", "rb") as f:
     g = Graph(store=store, identifier=identifier, bind_namespaces='core').parse(file=f)
 with open("./shacl-shacl.pickle", "wb") as f:
-    pickle.dump((store, identifier), f, protocol=4)  # protocol 5 only works in python 3.8+
+    pickle.dump((store, identifier), f, protocol=5)

pyshacl/constraints/constraint_component.py

@@ -166,7 +166,11 @@ def make_v_result_description(
             severity_desc = "Validation Result"
         source_shape_text = stringify_node(sg, self.shape.node)
         severity_node_text = stringify_node(sg, severity)
-        focus_node_text = stringify_node(datagraph or sg, focus_node)
+        try:
+            focus_node_text = stringify_node(datagraph or sg, focus_node)
+        except (LookupError, ValueError):
+            # focus node doesn't exist in the datagraph. We can deal.
+            focus_node_text = str(focus_node)
         desc = "{} in {} ({}):\n\tSeverity: {}\n\tSource Shape: {}\n\tFocus Node: {}\n".format(
             severity_desc,
             constraint_name,
@@ -176,7 +180,11 @@ def make_v_result_description(
             focus_node_text,
         )
         if value_node is not None:
-            val_node_string = stringify_node(datagraph or sg, value_node)
+            try:
+                val_node_string = stringify_node(datagraph or sg, value_node)
+            except (LookupError, ValueError):
+                # value node doesn't exist in the datagraph.
+                val_node_string = str(value_node)
             desc += "\tValue Node: {}\n".format(val_node_string)
         if result_path is None and self.shape.is_property_shape:
             result_path = self.shape.path()

pyshacl/constraints/core/cardinality_constraints.py

@@ -78,9 +78,12 @@ def make_generic_messages(self, datagraph: GraphLike, focus_node, value_node) ->
         p = self.shape.path()
         if p:
             p = stringify_node(self.shape.sg.graph, p)
-            m = "Less than {} values on {}->{}".format(
-                str(self.min_count.value), stringify_node(datagraph, focus_node), p
-            )
+            try:
+                focus_string = stringify_node(datagraph, focus_node)
+            except (LookupError, ValueError):
+                # focus node doesn't exist in the datagraph. We can deal.
+                focus_string = str(focus_node)
+            m = "Less than {} values on {}->{}".format(str(self.min_count.value), focus_string, p)
         else:
             m = "Less than {} values on {}".format(str(self.min_count.value), stringify_node(datagraph, focus_node))
         return [Literal(m)]

pyshacl/constraints/core/logical_constraints.py

@@ -57,11 +57,16 @@ def constraint_name(cls) -> str:
         return "NotConstraintComponent"
 
     def make_generic_messages(self, datagraph: GraphLike, focus_node, value_node) -> List[rdflib.Literal]:
+        try:
+            value_node_str = stringify_node(datagraph, value_node)
+        except (LookupError, ValueError):
+            # value node doesn't exist in the datagraph.
+            value_node_str = str(value_node)
         if len(self.not_list) == 1:
-            m = f"Node {stringify_node(datagraph, value_node)} must not conform to shape {stringify_node(self.shape.sg.graph, self.not_list[0])}"
+            m = f"Node {value_node_str} must not conform to shape {stringify_node(self.shape.sg.graph, self.not_list[0])}"
         else:
             nots_list = " , ".join(stringify_node(self.shape.sg.graph, n) for n in self.not_list)
-            m = f"Node {stringify_node(datagraph, value_node)} must not conform to any shapes in {nots_list}"
+            m = f"Node {value_node_str} must not conform to any shapes in {nots_list}"
         return [rdflib.Literal(m)]
 
     def evaluate(self, executor: SHACLExecutor, datagraph: GraphLike, focus_value_nodes: Dict, _evaluation_path: List):
@@ -172,7 +177,12 @@ def make_generic_messages(self, datagraph: GraphLike, focus_node, value_node) ->
                 )
                 and_node_strings.append(f"({and_node_string1})")
             and_node_string = " and ".join(and_node_strings)
-        m = "Node {} must conform to all shapes in {}".format(stringify_node(datagraph, value_node), and_node_string)
+        try:
+            value_node_str = stringify_node(datagraph, value_node)
+        except (LookupError, ValueError):
+            # value node doesn't exist in the datagraph.
+            value_node_str = str(value_node)
+        m = f"Node {value_node_str} must conform to all shapes in {and_node_string}"
         return [rdflib.Literal(m)]
 
     def evaluate(
@@ -277,9 +287,12 @@ def make_generic_messages(self, datagraph: GraphLike, focus_node, value_node) ->
                 )
                 or_node_strings.append(f"({or_node_string1})")
             or_node_string = " and ".join(or_node_strings)
-        m = "Node {} must conform to one or more shapes in {}".format(
-            stringify_node(datagraph, value_node), or_node_string
-        )
+        try:
+            value_node_str = stringify_node(datagraph, value_node)
+        except (LookupError, ValueError):
+            # value node doesn't exist in the datagraph.
+            value_node_str = str(value_node)
+        m = f"Node {value_node_str} must conform to one or more shapes in {or_node_string}"
         return [rdflib.Literal(m)]
 
     def evaluate(
@@ -384,9 +397,12 @@ def make_generic_messages(self, datagraph: GraphLike, focus_node, value_node) ->
                 )
                 xone_node_strings.append(f"({xone_node_string1})")
             xone_node_string = " and ".join(xone_node_strings)
-        m = "Node {} must conform to exactly one shape in {}".format(
-            stringify_node(datagraph, value_node), xone_node_string
-        )
+        try:
+            value_node_str = stringify_node(datagraph, value_node)
+        except (LookupError, ValueError):
+            # value node doesn't exist in the datagraph.
+            value_node_str = str(value_node)
+        m = f"Node {value_node_str} must conform to exactly one shape in {xone_node_string}"
         return [rdflib.Literal(m)]
 
     def evaluate(

pyshacl/constraints/core/string_based_constraints.py

@@ -4,7 +4,7 @@
 """
 import logging
 import re
-from typing import Dict, List
+from typing import Dict, List, cast
 
 import rdflib
 from rdflib.namespace import XSD
@@ -261,7 +261,7 @@ class PatternConstraintComponent(StringBasedConstraintBase):
 
     def __init__(self, shape: Shape) -> None:
         super(PatternConstraintComponent, self).__init__(shape)
-        patterns_found: List[RDFNode] = []
+        patterns_found: List[rdflib.Literal] = []
         for pattern_found in self.shape.objects(SH_pattern):
             if not isinstance(pattern_found, rdflib.Literal):
                 raise ConstraintLoadError(
@@ -274,14 +274,32 @@ def __init__(self, shape: Shape) -> None:
                 "PatternConstraintComponent must have at least one sh:pattern predicate.",
                 "https://www.w3.org/TR/shacl/#PatternConstraintComponent",
             )
-        self.string_rules = patterns_found
+        self.string_rules = cast(List[RDFNode], patterns_found)
         flags_found = set(self.shape.objects(SH_flags))
         if len(flags_found) > 0:
             # Just get the first found flags
             self.flags = next(iter(flags_found))
         else:
             self.flags = None
 
+        re_flags = 0
+        if self.flags:
+            flags = str(self.flags.value).lower()
+            case_insensitive = 'i' in flags
+            if case_insensitive:
+                re_flags |= re.I
+            m = 'm' in flags
+            if m:
+                re_flags |= re.M
+        self.compiled_cache = {}
+        for p in patterns_found:
+            if p.value is not None and len(p.value) > 1:
+                re_pattern = str(p.value)
+            else:
+                re_pattern = str(p)
+            re_matcher = re.compile(re_pattern, re_flags)
+            self.compiled_cache[p] = re_matcher
+
     @classmethod
     def constraint_parameters(cls) -> List[rdflib.URIRef]:
         return [SH_pattern]
@@ -311,18 +329,9 @@ def make_generic_messages(self, datagraph: GraphLike, focus_node, value_node) ->
     def _evaluate_string_rule(self, r, target_graph, f_v_dict):
         reports = []
         non_conformant = False
-        assert isinstance(r, rdflib.Literal)
-        re_flags = 0
-        if self.flags:
-            flags = str(self.flags.value).lower()
-            case_insensitive = 'i' in flags
-            if case_insensitive:
-                re_flags |= re.I
-            m = 'm' in flags
-            if m:
-                re_flags |= re.M
-        re_pattern = str(r.value)
-        re_matcher = re.compile(re_pattern, re_flags)
+        re_matcher = self.compiled_cache.get(r, None)
+        if re_matcher is None:
+            raise RuntimeError(f"No compiled regex for {r}")
         for f, value_nodes in f_v_dict.items():
             for v in value_nodes:
                 match = False
@@ -379,7 +388,7 @@ def constraint_name(cls) -> str:
         return "LanguageInConstraintComponent"
 
     def make_generic_messages(self, datagraph: GraphLike, focus_node, value_node) -> List[rdflib.Literal]:
-        m = "String language is not in {}".format(stringify_node(datagraph, self.string_rules[0]))
+        m = "String language is not in {}".format(stringify_node(self.shape.sg.graph, self.string_rules[0]))
         return [rdflib.Literal(m)]
 
     def _evaluate_string_rule(self, r, target_graph, f_v_dict):

pyshacl/rdfutil/clone.py

@@ -125,6 +125,8 @@ def mix_datasets(
         for i in base_ds.store.contexts(None)
     ]
     if isinstance(base_ds, rdflib.Dataset) and len(base_named_graphs) < 1:
+        # rdflib.Dataset always includes the DEFAULT_GRAPH_ID named graph
+        # but a conjunctive graph does not. It _could_ return no graphs.
         base_named_graphs = [
             rdflib.Graph(base_ds.store, DATASET_DEFAULT_GRAPH_ID, namespace_manager=base_ds.namespace_manager)
         ]
@@ -355,5 +357,5 @@ def clone_node(
                         cloned_o = clone_node(graph, o, target_graph, recursion=recursion + 1, deep_clone=deep_clone)
                     target_graph.add((new_node, cloned_p, cloned_o))
     else:
-        new_node = rdflib.term.Identifier(str(node))
+        raise ValueError(f"Cannot clone node of type {type(node)}")
     return new_node