Perl implementation of Smith-Waterman This is the homework for Computational Biology(BI3105 2014.09-2015.01) at SUSTC.
#Usages
perl smith-waterman_aln_two_sequence.pl ATCGATGCGA ATCGTGCAA
perl smith-waterman_aln_two_sequence.pl asdfghjkl adfgshdkl
perl smith-waterman_aln_fasta.pl alignment-sequence.fasta