Variant/locus matching case insensitive

SACGF · Aug 25, 2021 · 7c4e81c · 7c4e81c
1 parent 37ef642
commit 7c4e81c
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/snpdb/models/models_variant.py b/snpdb/models/models_variant.py
@@ -28,10 +28,10 @@
 from snpdb.models.models_genome import Contig, GenomeBuild, GenomeBuildContig
 from snpdb.models.models_enums import AlleleConversionTool, AlleleOrigin, ProcessingStatus
 
-LOCUS_PATTERN = re.compile(r"^([^:]+):(\d+)[,\s]*([GATC]+)$")
+LOCUS_PATTERN = re.compile(r"^([^:]+):(\d+)[,\s]*([GATC]+)$", re.IGNORECASE)
 LOCUS_NO_REF_PATTERN = r"^([^:]+):(\d+)$"
-VARIANT_PATTERN = re.compile(r"^([^:]+):(\d+)[,\s]*([GATC]+)>([GATC]+)$")
-REF_VARIANT_PATTERN = re.compile(r"^([^:]+):(\d+)[,\s]*([GATC]+)>= \(ref\)$")
+VARIANT_PATTERN = re.compile(r"^([^:]+):(\d+)[,\s]*([GATC]+)>([GATC]+)$", re.IGNORECASE)
+REF_VARIANT_PATTERN = re.compile(r"^([^:]+):(\d+)[,\s]*([GATC]+)>= \(ref\)$", re.IGNORECASE)
 
 allele_validate_signal = django.dispatch.Signal(providing_args=["allele"])