Skip to content

Commit

Permalink
Update README
Browse files Browse the repository at this point in the history
  • Loading branch information
coltonlloyd authored Oct 19, 2017
1 parent c416bba commit 68c7813
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions README.rst
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ COBRA Toolbox for constructing and manipulating genome-scale models of metabolis

For more information on ME-models and the COBRAme ME-model architecture, see the COBRAme readthedocs_.

If using COBRAme or *i*JL1678b-ME in a publication, please cite: `doi:10.1101/106559 <https://doi.org/10.1101/106559>`_. Note that the model may be edited and updated until it is peer-reviewed and published.
If using COBRAme or iJL1678b-ME in a publication, please cite: `doi:10.1101/106559 <https://doi.org/10.1101/106559>`_. Note that the model may be edited and updated until it is peer-reviewed and published.

Installation
------------
Expand All @@ -17,7 +17,7 @@ Installation

Build ME-model
--------------
A full COBRAme ME-model currently only exists for *E. coli* K-12 MG1655. See the ECOLIme_ package for the data and scripts required to build *i*JL1678b-ME. After installing ECOLIme_, *i*JL1678b-ME can be constructed from scratch by running `build_ME_model.py <https://github.com/SBRG/ecolime/tree/master/ecolime>`_.
A full COBRAme ME-model currently only exists for *E. coli* K-12 MG1655. See the ECOLIme_ package for the data and scripts required to build iJL1678b-ME. After installing ECOLIme_, iJL1678b-ME can be constructed from scratch by running `build_ME_model.py <https://github.com/SBRG/ecolime/tree/master/ecolime>`_.

Solving
-------
Expand Down Expand Up @@ -64,6 +64,7 @@ Requirements
COBRAme and its extensions require:

- Python versions >= 2.7
- COBRApy versions <= 0.5.11. We recommend using 0.5.11.
- Linux is recommended, with a relatively recent glibc. Mac OS X is also supported. Windows has worked in the past, but is not explicitly supported at this time.

.. _readthedocs: http://cobrame.readthedocs.io/en/stable/
Expand Down

0 comments on commit 68c7813

Please sign in to comment.