Add phylon location plotting functions

README.md

@@ -30,6 +30,12 @@ Install dependencies:
 pip install -r requirements.txt
 ```
 
+Install pyphylon package:
+
+```bash
+pip install -e .
+```
+
 ## Usage
 
 Provide a quick start example of how to use the tool:

examples/6a_phylon_location_plotting.ipynb

@@ -0,0 +1,63 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import pyphylon.plotting_util\n",
+    "import pyphylon.plotting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "%matplotlib inline\n",
+    "%config InlineBackend.figure_format = 'svg'"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "PATH_TO_DATA = './data/'"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "REFERENCE_STRAIN = ''"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "pyphylon",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}