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@SMD-Bioinformatics-Lund

SMD Bioinformatics Lund

Bioinformatic team at Section for Molecular Diagnostics, Laboratory Services, Region Skåne, Lund

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  1. gens gens Public

    JavaScript 13 5

  2. nextflow_wgs nextflow_wgs Public

    Perl 6 5

  3. nextflow_microwgs nextflow_microwgs Public

    Perl 2 1

  4. nextflow_tumwgs nextflow_tumwgs Public

    Perl 2 2

  5. SomaticPanelPipeline SomaticPanelPipeline Public

    Nextflow 2

Repositories

Showing 10 of 58 repositories
  • bonsai-prp Public

    Pipeline output Processing Program for Bonsai

    SMD-Bioinformatics-Lund/bonsai-prp’s past year of commit activity
    Python 0 GPL-3.0 0 5 0 Updated Jan 24, 2025
  • PipeEval Public

    Evaluate changes to your pipelines.

    SMD-Bioinformatics-Lund/PipeEval’s past year of commit activity
    Python 0 Apache-2.0 0 6 0 Updated Jan 24, 2025
  • Nisse Public

    Post-processing pipeline for Tomte

    SMD-Bioinformatics-Lund/Nisse’s past year of commit activity
    Nextflow 0 0 7 1 Updated Jan 24, 2025
  • bonsai Public

    Visualize and analyze resistance and outbreak of bacterial pathogen

    SMD-Bioinformatics-Lund/bonsai’s past year of commit activity
    Standard ML 4 GPL-3.0 1 24 2 Updated Jan 24, 2025
  • nextflow_wgs Public
    SMD-Bioinformatics-Lund/nextflow_wgs’s past year of commit activity
    Perl 6 5 88 (3 issues need help) 4 Updated Jan 23, 2025
  • gms_16S Public Forked from genomic-medicine-sweden/gms_16S

    A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.

    SMD-Bioinformatics-Lund/gms_16S’s past year of commit activity
    Groovy 0 GPL-3.0 2 0 0 Updated Jan 23, 2025
  • pytest-presentation Public
    SMD-Bioinformatics-Lund/pytest-presentation’s past year of commit activity
    Python 0 0 0 0 Updated Jan 22, 2025
  • PGxModule Public

    PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.

    SMD-Bioinformatics-Lund/PGxModule’s past year of commit activity
    Nextflow 1 GPL-3.0 0 6 (1 issue needs help) 0 Updated Jan 22, 2025
  • coyote_blueprinted Public
    SMD-Bioinformatics-Lund/coyote_blueprinted’s past year of commit activity
    Python 0 0 1 0 Updated Jan 22, 2025
  • SomaticPanelPipeline Public
    SMD-Bioinformatics-Lund/SomaticPanelPipeline’s past year of commit activity
    Nextflow 0 2 16 (1 issue needs help) 0 Updated Jan 22, 2025
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