fix corrupted ipynb file

SMTG-Bham · Oct 1, 2021 · 6cc8c38 · 6cc8c38
1 parent 44eb24b
commit 6cc8c38
Showing 1 changed file with 3 additions and 26 deletions.
diff --git a/tutorials/generation/generation_tutorial.ipynb b/tutorials/generation/generation_tutorial.ipynb
@@ -39,17 +39,10 @@
     "warnings.filterwarnings(\"always\")\n",
     "warnings.filterwarnings(\"ignore\", message=\"numpy.ufunc size changed\")\n",
     "warnings.filterwarnings(\"ignore\", message=\"POTCAR data\")\n",
-<<<<<<< HEAD
-    "warnings.filterwarnings(\"ignore\", message=\"Overriding the POTCAR functional\")\n",
-    "warnings.filterwarnings(\"ignore\", message=r\".*is a deprecated alias for the builtin.*\")\n",
-    "warnings.filterwarnings(\"ignore\", message=r\".*should_run_async.*\")"
-   ]
-=======
     "warnings.filterwarnings(\"ignore\", message=\"Overriding the POTCAR functional\")"
    ],
    "outputs": [],
    "metadata": {}
->>>>>>> develop
   },
   {
    "cell_type": "code",
@@ -65,7 +58,7 @@
    "cell_type": "markdown",
    "source": [
     "## Generate slabs for a specified Miller index\n",
-    "This simple example uses the output structure from a bulk relaxation of Y$_2$Ti$_2$S$_2$O$_5$. We create a series of slabs with thickness of 20, 30 and 40 Å, and vacuum thicknesses of 20, 30, 40 and 50 Å in the (0,0,1) direction. We suppress the default behaviour of saving input files by setting `save_slabs=False`."
+    "This simple example uses the output structure from a bulk relaxation of $Y_2 Ti_2 S_2 O_5$. We create a series of slabs with thickness of 20, 30 and 40 Å, and vacuum thicknesses of 20, 30, 40 and 50 Å in the (0,0,1) direction. We suppress the default behaviour of saving input files by setting `save_slabs=False`."
    ],
    "metadata": {}
   },
@@ -92,14 +85,9 @@
   {
    "cell_type": "markdown",
    "source": [
-<<<<<<< HEAD
-    "If you leave `thicknesses=[20,30,40], vacuums=[20,30,40,50]` you will get a warning about repeted slabs that have been removed from the final list. We can inspect one entry of the list which is a dictionary, containing details and the slab itself as a pymatgen structure:"
-   ]
-=======
     "We get a warning about repeted slabs that have been removed from the final list. We can inspect one entry of the list which is a dictionary, containing details and the slab itself as a pymatgen structure:"
    ],
    "metadata": {}
->>>>>>> develop
   },
   {
    "cell_type": "code",
@@ -196,17 +184,6 @@
    ],
    "metadata": {}
   },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "<div class=\"alert alert-info\">\n",
-    "\n",
-    "**Note:** If you are running this on Binder, you may want to reduce the number of vacuum and slab thicknesses to try for it to finish in a reasonable time. Try `thicknesses=[20,40], vacuums=[20]`.\n",
-    "\n",
-    "</div>"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -226,11 +203,11 @@
   {
    "cell_type": "markdown",
    "source": [
-    "By default `save_slabs=True`, so the structure files are saved to files. A directory has been created locally called `Y4Ti4S4O10` and each structure has been named in the format `POSCAR_miller-index_slab-thickness_vacuum-thickness_slab-index`. The VASP POSCAR file is the default, but any other input file supported by pymatgen can be supplied as the `fmt` argument.  \n",
+    "By default `save_slabs=True`, so the structure files are saved to files. A directory has been created locally called `Y2Ti2S2O5` and each structure has been named in the format `POSCAR_miller-index_slab-thickness_vacuum-thickness_slab-index`. The VASP POSCAR file is the default, but any other input file supported by pymatgen can be supplied as the `fmt` argument.  \n",
     "\n",
     "### Make separate folders\n",
     "\n",
-    "We can get the function to organise these into directories by setting `make_fols=True`. The structure files will go into subfolders with the following structure: `hkl/slab_vacuum_index/POSCAR` in the `Y4Ti4S4O10` directory. "
+    "We can get the function to organise these into directories by setting `make_fols=True`. The structure files will go into subfolders with the following structure: `hkl/slab_vacuum_index/POSCAR` in the `Y2Ti2S2O5` directory. "
    ],
    "metadata": {}
   },