Merge pull request #80 from Sage-Bionetworks/jbeck/AG-1147/test_trans… #272

	# This is a basic workflow to help you get started with Actions

	name: CI

	on:
	push:
	branches: ["dev"]
	pull_request:

	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	jobs:
	# test job includes unit tests and coverage
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version:
	- "3.7"
	- "3.8"
	- "3.9"
	- "3.10"
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install .
	pip install pytest pytest-cov
	- name: Test with pytest
	run: \|
	pytest tests/ --cov=agoradatatools --cov-report=html
	- name: Upload pytest test results
	uses: actions/upload-artifact@v3
	with:
	name: pytest-results-${{ matrix.python-version }}
	path: htmlcov
	# Use always() to always run this step to publish test results when there are test failures
	if: ${{ always() }}
	# build job includes integration test
	build:
	needs: [test]
	# The type of runner that the job will run on
	name: test data processing
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: "3.9"
	- run: pip install -U setuptools
	- run: pip install .
	- run: adt test_config.yaml -t ${{secrets.SYNAPSE_PAT}}

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