feat(openchallenges): add new operation property to Challenge schema

[vpchung]

Changelog

• Add operation_id to Challenge data model
• Regenerate API spec + Java files
• Add operation_id to challenges table in DB
• Include operation in CSV dump file for challenges
• Update db-update script to include operation_id into the CSV dump
• Add EDAM Operation Class to challenge profile, but I think there is a bug (see this comment)

Preview

challenges table

API docs

Challenge profile

[tschaffter]

This is related to the other PR, but 0 should not be a valid operation (ID).

[vpchung]

2024 update:

• operation is now operation_id

• automated script that dumps the CSV files has been updated to include operation_id into the dump

• I started adding the operation class to the challenge profile:

         <td class="text-right">EDAM Operation Class</td>
         <td [ngClass]="{ 'text-grey': challenge.operationId === null }">
           {{ useNaIfFalsey(challenge.operationId) }}
         </td>
  

  but I think some updates to the REST API is needed before I can use challenge.operationId.

[tschaffter]

The first comment in the thread should be updated as it includes deprecated information.

Have we discussed how the operation ID is going to be used? I can then implement the necessary changes to the challenge service.

[vpchung]

Have we discussed how the operation ID is going to be used? I can then implement the necessary changes to the challenge service.

I mentioned on Friday that I plan to add it to the profile for now - I think that will be the easiest win. I can also see it as a search option.

[vpchung]

Remaining TODO (maybe save for another PR?)

After updating the Angular CLI client, I was able to use challenge.operation_id on the frontend; "EDAM Operation Class" is now part of a challenge profile:

However, there should be 4 profiles that have a defined operation class, yet they are not shown on the profile:

The "Patient Mortality Prediction" challenge (top screenshot) is one of them.

[sonarqubecloud]

Quality Gate passed for 'openchallenges-app'

Issues
0 New issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud

[sonarqubecloud]

Quality Gate passed for 'openchallenges-challenge-service'

Issues
0 New issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
3.1% Duplication on New Code

See analysis details on SonarCloud

[sonarqubecloud]

Quality Gate passed for 'openchallenges-organization-service'

Issues
0 New issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud

[sonarqubecloud]

Quality Gate passed for 'openchallenges-image-service'

Issues
0 New issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud

[tschaffter]

Refactored in #2534. Thanks @vpchung for this new feature!