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This repository has been archived by the owner on Jan 27, 2020. It is now read-only.

Sarek 2.3 - Äpar
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@maxulysse maxulysse released this 28 Feb 08:09
· 128 commits to master since this release
2.3
7f7f2c2
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Learn about vigilant mode.
  • mapping step can now map BAM files too
  • Improve ASCAT
  • Improve AWS Batch configuration
  • Improve bamQC
  • Improve VEP
  • Run Sarek with conda
  • Use SnpEff and VEP cache
  • Improve usage of targetBED params
  • Improve targeted for Manta
  • Multiple patients TSV file
  • Update VEP from 95.1 to 95.2
  • Strelka Best Practices output is now prefixed with StrelkaBP_
  • VCFs and Annotated VCFs are now ordered by Patient, then tools
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