Fix cases that MiSeq samplesheet misses index or index2 #44

	name: Test code
	on: [push, pull_request]

	jobs:
	pytest:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repo
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.10"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements.txt
	pip install -r requirements-dev.txt
	- name: Install TACA
	run: pip install -e .
	- name: pytest
	# Options are configured in pyproject.toml
	run: pytest
	- name: CodeCov
	run: \|
	# Replace `linux` below with the appropriate OS
	# Options are `alpine`, `linux`, `macos`, `windows`
	curl -Os https://uploader.codecov.io/latest/linux/codecov
	chmod +x codecov
	./codecov -t ${{ secrets.CODECOV_TOKEN }}

Provide feedback