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Sending latest changes from development live #316

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merged 4 commits into from
May 21, 2024
Merged

Sending latest changes from development live #316

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a7f5a3f
added some recommended keywords and fixed minor typos
LianeHughes May 2, 2024
d427d6e
Merge pull request #313 from ScilifelabDataCentre/add_keywords_fix_typos
senthil10 May 2, 2024
a147909
Show deployed version at footer
senthil10 May 20, 2024
926efc3
Merge pull request #315 from ScilifelabDataCentre/show_version
Ziip-dev May 20, 2024
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11 changes: 6 additions & 5 deletions Dockerfiles/Dockerfile
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Expand Up @@ -2,15 +2,16 @@
FROM alpine:3.19.1 AS build
RUN apk add --no-cache wget=1.21.4-r0
ARG HUGO_VERSION="0.123.7"
ARG HUGO_ENV_ARG
WORKDIR /src
COPY ./ /src
RUN wget --quiet "https://github.com/gohugoio/hugo/releases/download/v${HUGO_VERSION}/hugo_${HUGO_VERSION}_Linux-64bit.tar.gz" && \
tar xzf hugo_${HUGO_VERSION}_Linux-64bit.tar.gz && \
rm -r hugo_${HUGO_VERSION}_Linux-64bit.tar.gz && \
mv hugo /usr/bin && \
chmod 755 /usr/bin/hugo
WORKDIR /src
COPY ./ /src
RUN mkdir /target && \
hugo -d /target
chmod 755 /usr/bin/hugo && \
mkdir /target && \
hugo -d /target -e "${HUGO_ENV_ARG}"

# Serve the generated html using nginx
FROM nginxinc/nginx-unprivileged:alpine
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4 changes: 2 additions & 2 deletions content/news/2024-04-22.md
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Expand Up @@ -3,9 +3,9 @@ title: Request for descriptions of proposed national data services related to Ce
date: 2024-04-22
---

SciLifeLab collaborates with specific partner orgnanisations to organise work related to data services and bioinformatics support as part of the [The SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS)](https://www.scilifelab.se/data-driven/). This work takes place at one of four Data Science Nodes. These four nodes, one for each of the scientific focus areas of the DDLS program, are located across Sweden. They comprise of staff from [SciLifeLab Data Centre](https://www.scilifelab.se/data/) and [NBIS (National Bioinformatics Infrastructure Sweden)](https://nbis.se/). The staff are embedded in relevant environments at the hosting organisations, and are also integrated in the national data platform and bioinformatics support teams, respectively.
SciLifeLab collaborates with specific partner organisations to organise work related to data services and bioinformatics support as part of the [The SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS)](https://www.scilifelab.se/data-driven/). This work takes place at one of four Data Science Nodes. These four nodes, one for each of the scientific focus areas of the DDLS program, are located across Sweden. They comprise of staff from [SciLifeLab Data Centre](https://www.scilifelab.se/data/) and [NBIS (National Bioinformatics Infrastructure Sweden)](https://nbis.se/). The staff are embedded in relevant environments at the hosting organisations, and are also integrated in the national data platform and bioinformatics support teams, respectively.

The aim of the SciLifeLab Data Platform is to boost the number of services available for data-driven life science research in Sweden. The aim of the SciLifeLab Data Platform is to create an envronment in which users can easily locate, access, and use resources (including data, tools, and e-infrastructure) relevant to data-driven life science research. Each of the Data Science Nodes works with the SciLifeLab Data Platform towards this aim.
The aim of the SciLifeLab Data Platform is to boost the number of services available for data-driven life science research in Sweden. The aim of the SciLifeLab Data Platform is to create an environment in which users can easily locate, access, and use resources (including data, tools, and e-infrastructure) relevant to data-driven life science research. Each of the Data Science Nodes works with the SciLifeLab Data Platform towards this aim.

The Cell and Molecular Biology Node (hosted at Chalmers University of Technology) is reaching out to the data-driven life science community for descriptions of potential national data services in the field of cell and molecular biology. These services will then be assessed for inclusion in the SciLifeLab Data Platform. The services will benefit from, among other things, significantly increased promotion, which could lead to greater opportunities for funding opportunities and collaboration.

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25 changes: 20 additions & 5 deletions data/services.json
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Expand Up @@ -7,7 +7,7 @@
"database"
],
"search_tags": [
"BioImage Analysis", "AI Models", "Model Zoo", "Open Science", "Data-Driven Life Sciences", "DDLS", "modelling", "Artificial intelligence"
"AI4Life BioImage Model Zoo", "BioImage Analysis", "AI Models", "Model Zoo", "Open Science", "Data-Driven Life Sciences", "DDLS", "modelling", "Artificial intelligence"
],
"name": "AI4Life BioImage Model Zoo",
"description": "A collaborative effort to bring artificial intelligence models to the bioimaging community",
Expand All @@ -27,6 +27,7 @@
"search_tags": [
"SciLifeLab Serve",
"AI",
"Serve",
"Artificial intelligence",
"Apps",
"DASH",
Expand Down Expand Up @@ -55,6 +56,7 @@
],
"search_tags": [
"FAIR Storage",
"Storage",
"SUPR",
"SciLifeLab",
"Data Centre"
Expand All @@ -81,7 +83,10 @@
"NBIS",
"SciLifeLab",
"Data Centre",
"Tool"
"Tool",
"Figshare",
"SciLifeLab Data Repository",
"Data Repository"
],
"name": "SciLifeLab Data Repository",
"description": "Repository for publishing any kind of research-related data, posters, presentations, and more!",
Expand All @@ -101,6 +106,8 @@
],
"search_tags": [
"Pathogens portal",
"infectious disease data",
"Swedish Pathogens Portal",
"Pandemic preparedness portal",
"COVID-19",
"SciLifeLab",
Expand Down Expand Up @@ -133,7 +140,8 @@
"Portal",
"NBIS",
"SciLifeLab",
"Data Centre"
"Data Centre",
"SciLifeLab RDM Guidelines"
],
"name": "SciLifeLab RDM Guidelines",
"description": "A portal containing information on research data management in Sweden",
Expand Down Expand Up @@ -190,7 +198,8 @@
"Sensitive data",
"SciLifeLab",
"Data Centre",
"Tool"
"Tool",
"SciLifeLab Data Delivery System"
],
"name": "SciLifeLab Data Delivery System",
"description": "Cloud-based system for the delivery of data from SciLifeLab units to their users",
Expand Down Expand Up @@ -234,6 +243,7 @@
"Anubis",
"Funding calls",
"SciLifeLab",
"funding",
"Data Centre",
"Tool"
],
Expand Down Expand Up @@ -381,6 +391,7 @@
"NBIS",
"SciLifeLab",
"Data Centre",
"SciLifeLab Data Stewardship Wizard",
"Tool"
],
"name": "SciLifeLab Data Stewardship Wizard",
Expand Down Expand Up @@ -486,6 +497,7 @@
"primer trimming",
"quality trimming",
"demultiplexing",
"Cutadapt",
"NBIS"
],
"name": "Cutadapt",
Expand All @@ -509,6 +521,7 @@
"illumina",
"bcl2fastq",
"demultiplexing",
"CheckQC",
"NGI"
],
"name": "CheckQC",
Expand Down Expand Up @@ -693,7 +706,9 @@
"Hosting",
"E-infrastructure",
"SciLifeLab",
"Data Centre"
"Data Centre",
"Hosting on the Data Platform",
"Data Platform"
],
"name": "Hosting on the Data Platform",
"description": "Details about how researchers, research groups, and organisations can apply for hosting via the SciLifeLab Platform.",
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