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This pipeline based on snakemake calls CHIP variants from next-generation whole-exome/genome sequencing of human samples and produces a purely filtered VCF file containing high confident CHIP mutations.

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Shuhua-Group/CHIP-mutation-calling-NGS-pipeline

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CHIP mutation calling pipeline for individual sample

This pipeline based on snakemake calls CHIP variants from next-generation whole-exome/genome sequencing of human samples and produces a purely filtered VCF file containing high confident CHIP mutations

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Notes

  • Please give credit to the relevant paper if the pipeline was applied to your work
  • tech support: [email protected]

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This pipeline based on snakemake calls CHIP variants from next-generation whole-exome/genome sequencing of human samples and produces a purely filtered VCF file containing high confident CHIP mutations.

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