Code

Generalized lightcurves#754

Code

Merged

matteobachetti merged 96 commits intomainStingraySoftware/stingray:mainfrom generalized_lightcurvesStingraySoftware/stingray:generalized_lightcurvesCopy head branch name to clipboardDec 15, 2023

+4,085-761

Commits

Commits on Nov 16, 2023

• Make timeseries more general-purpose, start moving stuff from Lightcurve, test

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• Implementing and generalizing most operations

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• Add internal array attrs

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• Adapt Lightcurve

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• Add changelog

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• Add management of timeseries

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• Fix what is an array attr and what is not

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• Fix save_all option

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• Fix bug with unnamed dimensions in xarray export

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• Make multi-dimensional array_attrs work with pandas and xarray roundtrip

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• Fix docstrings

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• Add sub, add, __iadd__, __sub__ methods

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• Add tests for the sub, add, __iadd__, __sub__ methods

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• Formatting fixes

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  9d79184

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• Test and fix internal array attributes

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• Fix and test comparisons

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• Fix inconsistent behavior in apply_mask

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• Be very careful with lower case attributes

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• More test cases, and more informative warnings when info is lost

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• Fix formatting [docs only]

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• Introduce to_timeseries method in event list

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• Try to make write more robust to float128 errors in FITS

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• Allow to change mjdref and time shift in place; fix GTI modification when slicing.

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• Test invalid instantiation of time series

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• Fix more corner cases when dealing with attributes

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• Fix and test initialization of lightcurve time to None

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• test that make_1d_arrays_into_nd also works for 1-d arrays

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• Add dt information to timeseries

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• Fix call to timeseries initialization, and test

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• Complete cross spectrum and power spectrum acceptance of time series

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• Test without giving the light curve gti explicitly

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• Add function to test for complex in array

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• Speedup array creation

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• Fix rage/ranges call

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• Make more robust for numba's picky type selection

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• Fix from_lc when counts are negative

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• Fix test of lomb-scargle periodogram with wrong comparison

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• Add functions to make nd arrays into lists of single arrays

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• Better docstrings in _can_save_etcetera

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• Add docs to helper functions [docs only]

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• Import stuff from base.py

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• Cleanup

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• Move some operations to stingraytimeseries

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• Fix isinstance property test

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• Fix workings of meta, internal, and array attributes

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  8a24693

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• Fix issues when roundtripping with internal array attrs

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• Fix case with strange objects

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• Cleanup and concatenate internal array attributes

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• Further rebin fixes

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• Tests for truncate and rebin

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  1d23d07

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• Fix plotting

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• Fix plotting tests

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• Add sort test; add gti plotting to tests

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• Move more functionality to base, and test properly

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• Better description of data attributes [docs only]

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• Fix GTI behavior, simplify meta_attrs

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• Use more of the StingrayTimeseries inner workings

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• Fix docstring [docs only]

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• Fix filters; use apply_mask from TimeSeries; test

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• Fix error from size of None time

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• Fix docstring,really

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• Fix concatenate for mjdref difference; tests

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• Define join, _join_timeseries, concatenate methods

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• Use join, _join_timeseries, concatenate methods when possible

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• No need for deprecations

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• Make the ncounts attribute a property

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• Pep8 fixes

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• Fix issues when ignoring meta. Test properly

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• Add description [docs only]

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• Call the gti_treatment strategy

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  49084c3

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• Fix docstrings

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• Fix more docstrings

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  df128e4

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• Fix definition of mjdref as a float, not int 0

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• Warn when GTIs of data being summed are not the same

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• Add tests

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• Fix issues when using irregular binning in rebin_data

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• Eliminate warnings from docstrings

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Commits on Nov 28, 2023

• Add function to pretty print

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• Make warning on Windows actually useful

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Commits on Dec 14, 2023

• Move _can_save_longdouble and _can_serialize_meta to io

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• Move sqsum to utils

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• Add more info to docstrings

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• make __repr__ more useful

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• Add docs for no_longdouble

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  d9e0a5f

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• Fix docstrings

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• Fix docstrings

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  062d54b

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• Move properties before methods

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  9a82b97

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• Fix moar docstrings

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• Add docstrings; move int_sum_non_zero to utils

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  a4e90e6

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• Fix assertion in test

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• Add docstrings to functions converting to table or timeseries

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• Rename to_timeseries method

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• changed 'check_size' to 'validate_format'

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Commits on Dec 15, 2023

• Update notebooks

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• Update docs

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• Update docs

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