fix: importModel if SBML contains missing SBO terms #119
Workflow file for this run
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| name: Tests | |
| on: [pull_request] | |
| jobs: | |
| matlab-tests: | |
| runs-on: self-hosted | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Run tests | |
| id: matlab-test | |
| run: | | |
| TEST_RESULTS=$(/usr/local/bin/matlab -nodisplay -nosplash -nodesktop -r "warning('off', 'MATLAB:rmpath:DirNotFound'); rmpath(genpath('/home/m/ecModels-dependencies/RAVEN')); rmpath(genpath('/home/m/actions-runner')); addpath(genpath('.')); checkInstallation; cd('testing/unit_tests'); runtests(struct2table(dir('*.m')).name); exit;" | awk 'NR>13 && !/^(___|===|---)/') | |
| PARSED_RESULTS="${TEST_RESULTS//'%'/'%25'}" | |
| PARSED_RESULTS="${PARSED_RESULTS//$'\n'/'<br>'}" | |
| PARSED_RESULTS="${PARSED_RESULTS//$'\r'/'<br>'}" | |
| echo "results=$PARSED_RESULTS" >> $GITHUB_OUTPUT | |
| - name: Post comment | |
| uses: NejcZdovc/comment-pr@v2 | |
| with: | |
| file: "commentsFromTests.md" | |
| env: | |
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
| TEST_RESULTS: ${{steps.matlab-test.outputs.results}} | |
| GH_ACTION_RUN: ${{github.run_id}} |