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fix: swap soplex with scip as solver #520

Merged
merged 1 commit into from
Feb 12, 2024
Merged

fix: swap soplex with scip as solver #520

merged 1 commit into from
Feb 12, 2024

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edkerk
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@edkerk edkerk commented Feb 8, 2024

Main improvements in this PR:

  • fix:
    • swap soplex with scip as solver. The soplex option introduced in release 2.8.5 should not be used for MILP, scip is dedicated for these problems. Precompiled binaries for Windows are provided (downloaded upon request), further installation instructions are mentioned in the Wiki.

I hereby confirm that I have:

  • Selected develop as a target branch

@edkerk edkerk added this to the 2.8.7 milestone Feb 8, 2024
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github-actions bot commented Feb 8, 2024

This PR has been automatically tested with GH Actions. Here is the output of the tests:

 > Installing from location             /home/m/actions-runner/_work/RAVEN/RAVEN
> Checking RAVEN release DEVELOPMENT
> Checking MATLAB release 2020b
> Checking system architecture glnxa64
> Set RAVEN in MATLAB path Pass
> Save MATLAB path Pass
> Make binaries executable Pass

> Add Java paths for Excel format Pass
> Checking libSBML version 5.19.0
> Checking model import and export
> Import Excel format Pass
> Export Excel format Pass
> Import SBML format Pass
> Export SBML format Pass

> Checking for LP solvers
> glpk Pass
> gurobi Pass
> scip Fail
> cobra Pass
> Set RAVEN solver gurobi

> Checking BLAST+ Pass
> Checking DIAMOND Pass
> Checking HMMER Pass

> Checking function uniqueness Pass

*** checkInstallation complete ***

Running blastPlusTests
.
Done blastPlusTests

Running cdhitTests
.
Done cdhitTests

Running checkTasksTests
.
Done checkTasksTests

Running diamondTests
.
Done diamondTests

Running fillGapsLargeTests
..
Done fillGapsLargeTests

Running fillGapsSmallTests
...
Done fillGapsSmallTests

Running hmmerTests
.
Done hmmerTests

Running importExportTests
....
Done importExportTests

Running mafftTests
.
Done mafftTests

Running miriamTests
.
Done miriamTests

Running modelAbilitiesTests
........
Done modelAbilitiesTests

Running modelConversionTests
.
Done modelConversionTests

Running modelCurationTests
.......... ........
Done modelCurationTests

Running modelSortingTests
..
Done modelSortingTests

Running solverTests
..
Error occurred in solverTests/testSCIP and it did not run to completion.
---------
Error ID:
---------
''
--------------
Error Details:
--------------
Error using solverTests>testSCIP (line 80)
SCIP MEX binary not installed or not functional, test skipped
..
Done solverTests

Running tinitTests
..........
Done tinitTests

Failure Summary:

Name Failed Incomplete Reason(s)
=====================================================
solverTests/testSCIP X X Errored.

Note: In the case of multiple test runs, this post will be edited.

@edkerk edkerk merged commit 8fe29c6 into develop Feb 12, 2024
1 check passed
@edkerk edkerk deleted the fix/scip branch February 12, 2024 21:13
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