remove column name for CHR when reading in SNP CSV files (#187)

Co-authored-by: s2223108 <[email protected]>
TARGENE · Nov 28, 2023 · 8576e28 · 8576e28
1 parent 33c3ff8
commit 8576e28
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/tmle_inputs/from_actors.jl b/src/tmle_inputs/from_actors.jl
@@ -49,7 +49,7 @@ all_variants(bqtls::DataFrame, transactors::Vector{DataFrame}) = Set(vcat(bqtls.
 read_snps_from_csv(path::Nothing) = nothing
 function read_snps_from_csv(path::String)
     df = CSV.read(path, DataFrame)
-    df = "TF" in names(df) ? unique(df[:, [:ID, :CHR, :TF]], [:ID, :TF]) : unique(df[:, [:ID, :CHR]], :ID)
+    df = "TF" in names(df) ? unique(df[:, [:ID, :TF]], [:ID, :TF]) : unique(df[:, [:ID]], :ID)
     return(df)
 end