Code

Cvtmle#188

Code

Merged

olivierlabayle merged 34 commits intomainTARGENE/TargeneCore.jl:mainfrom cvtmleTARGENE/TargeneCore.jl:cvtmleCopy head branch name to clipboardFeb 5, 2024

+4,672-954

Commits

Commits on Dec 4, 2023

• update from_param_files

  olivierlabayle

  committed
  28164c7

• rename parameters estimands

  olivierlabayle

  committed
  0a7a0cf

• fix tests

  olivierlabayle

  committed
  48c492a

• drop unused files

  olivierlabayle

  committed
  01514c7

• remove deprecated info from readme

  olivierlabayle

  committed
  c6d91a4

• add serialization into test deps

  olivierlabayle

  committed
  5f858f8

Commits on Dec 6, 2023

• up TMLE and remove Manifest

  olivierlabayle

  committed
  5436de0

Commits on Dec 19, 2023

• add joint allele indep mode

  olivierlabayle

  committed
  25cdab7

Commits on Dec 26, 2023

• faster genotype calling and estimands generation

  

  Olivier Labayle

  committed
  8fb9c43

Commits on Jan 12, 2024

• add more general interaction generation

  olivierlabayle

  committed
  feccc8a

• Merge branch 'cvtmle' of github.com:TARGENE/TargeneCore.jl into cvtmle

  olivierlabayle

  committed
  e186879

• update syntax for interaction

  olivierlabayle

  committed
  21da08c

Commits on Jan 25, 2024

• update deps

  olivierlabayle

  committed
  66af05f

Commits on Jan 29, 2024

• add negative control files

  olivierlabayle

  committed
  73703d3

• update BGEN deps

  olivierlabayle

  committed
  32de6ed

• add permutation_test cli

  olivierlabayle

  committed
  ea9e325

• add random variants cli

  olivierlabayle

  committed
  a29e8f9

• reorg tl_inputs script

  olivierlabayle

  committed
  ba15a50

• add plot generation

  olivierlabayle

  committed
  129300a

Commits on Jan 30, 2024

• add sysimage build

  olivierlabayle

  committed
  6e3ed5f

• fix script

  olivierlabayle

  committed
  13c4e16

• remove deprecated option

  olivierlabayle

  committed
  a426e4a

• add compiler

  olivierlabayle

  committed
  e4e313e

• add generate_dataset cli

  olivierlabayle

  committed
  2bc6146

• add test

  olivierlabayle

  committed
  08c8e1e

• fix limit problem

  olivierlabayle

  committed
  6895615

• add verbosity to script

  olivierlabayle

  committed
  2587068

• update script arg table

  olivierlabayle

  committed
  249d4bd

• add script for plotting

  olivierlabayle

  committed
  a08eb00

Commits on Jan 31, 2024

• fix pvalue bug and deal with nans

  olivierlabayle

  committed
  ca4b076

• up TMLE dep

  olivierlabayle

  committed
  6cb0118

Commits on Feb 1, 2024

• add filter SAMPLE_IDS from estimators

  olivierlabayle

  committed
  91c07d6

Commits on Feb 5, 2024

• up Targeted Estimation dep

  olivierlabayle

  committed
  df9d631

• up version to match github

  olivierlabayle

  committed
  3a8d6ea