rename eid column

TARGENE · May 24, 2022 · 214ac06 · 214ac06
1 parent a4644a8
commit 214ac06
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/src/UKBMain.jl b/src/UKBMain.jl
@@ -62,6 +62,7 @@ function decode(parsed_args)
 
     columns = first_instance_fields(datasetfile)
     dataset = CSV.read(datasetfile, DataFrame, select=columns)
+    rename!(dataset, :eid => :SAMPLE_ID)
 
     fields = CSV.read(fieldsfile, DataFrame)
 

diff --git a/test/runtests.jl b/test/runtests.jl
@@ -75,8 +75,8 @@ end
     )
     decode(parsed_args)
     output = CSV.read(parsed_args["out"], DataFrame)
-    @test names(output) == ["eid", "21003-0.0", "22001-0.0"]
-    @test output[:, "eid"] isa Vector{Int}
+    @test names(output) == ["SAMPLE_ID", "21003-0.0", "22001-0.0"]
+    @test output[:, "SAMPLE_ID"] isa Vector{Int}
     @test output[:, "21003-0.0"] isa Vector{Int}
     @test output[:, "22001-0.0"] isa Vector{Union{Bool, Missing}}