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Clean up the tests #382

Clean up the tests

Clean up the tests #382

Workflow file for this run

name: build
on:
push:
branches: [ unstable, '[0-9]+.[0-9]+.x' ]
pull_request:
branches: [ unstable, '[0-9]+.[0-9]+.x' ]
workflow_call:
workflow_dispatch:
env:
CMAKE_C_COMPILER_LAUNCHER: ccache
CMAKE_CXX_COMPILER_LAUNCHER: ccache
CCACHE_COMPILERCHECK: content
CCACHE_BASEDIR: ${{ github.workspace }}
CCACHE_DIR: ${{ github.workspace }}/.ccache
CCACHE_MAXSIZE: 500M
CCACHE_SLOPPINESS: pch_defines,time_macros,include_file_mtime,include_file_ctime
CCACHE_COMPRESS: "1"
CCACHE_COMPRESSLEVEL: "1"
jobs:
build:
strategy:
fail-fast: false
matrix:
include:
- {os: ubuntu-22.04, cc: gcc-12, cxx: g++-12, doc: OFF, cov: ON}
- {os: ubuntu-22.04, cc: clang-15, cxx: clang++-15, doc: ON, cov: OFF}
- {os: macos-12, cc: gcc-12, cxx: g++-12, doc: OFF, cov: OFF}
- {os: macos-12, cc: clang, cxx: clang++, doc: OFF, cov: OFF}
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: actions/cache/restore@v3
with:
path: ${{ env.CCACHE_DIR }}
key: ccache-${{ matrix.os }}-${{ matrix.cc }}-${{ github.run_id }}
restore-keys:
ccache-${{ matrix.os }}-${{ matrix.cc }}-
- name: Install ubuntu dependencies
if: matrix.os == 'ubuntu-22.04'
run: >
sudo apt-get update &&
sudo apt-get install lsb-release wget software-properties-common &&
wget -O /tmp/llvm.sh https://apt.llvm.org/llvm.sh && sudo chmod +x /tmp/llvm.sh && sudo /tmp/llvm.sh 15 &&
sudo apt-get install
ccache
clang-15
g++-12
gfortran
hdf5-tools
libblas-dev
libclang-15-dev
libc++-15-dev
libc++abi-15-dev
libomp-15-dev
libfftw3-dev
libgfortran5
libgmp-dev
libhdf5-dev
liblapack-dev
libopenmpi-dev
openmpi-bin
openmpi-common
openmpi-doc
python3-clang-15
python3-dev
python3-mako
python3-mpi4py
python3-numpy
python3-pip
python3-scipy
python3-sphinx
python3-nbsphinx
- name: Install gcovr for test coverage
if: matrix.cov == 'ON'
run: |
python3 -m venv --system-site-packages $HOME/.venv/my_python
source $HOME/.venv/my_python/bin/activate
pip install gcovr
echo "VIRTUAL_ENV=$VIRTUAL_ENV" >> $GITHUB_ENV
echo "PATH=$PATH" >> $GITHUB_ENV
- name: Install homebrew dependencies
if: matrix.os == 'macos-12'
run: |
brew install ccache gcc@12 llvm hdf5 open-mpi openblas
mkdir $HOME/.venv
python3 -m venv $HOME/.venv/my_python
source $HOME/.venv/my_python/bin/activate
pip install mako numpy scipy mpi4py
pip install -r requirements.txt
echo "VIRTUAL_ENV=$VIRTUAL_ENV" >> $GITHUB_ENV
echo "PATH=$PATH" >> $GITHUB_ENV
- name: Build doxygen
if: matrix.doc == 'ON'
env:
CC: ${{ matrix.cc }}
CXX: ${{ matrix.cxx }}
LIBRARY_PATH: /usr/local/opt/llvm/lib
run: |
cd $HOME
git clone https://github.com/doxygen/doxygen.git
cd doxygen
git checkout 0a7e79813
mkdir build
cd build
cmake .. -Duse_libclang=ON -Dstatic_libclang=ON -Duse_libc++=OFF -DLLVM_ROOT=/usr/lib/llvm-15/lib/cmake/llvm -DClang_ROOT=/usr/lib/llvm-15/lib/cmake/clang
make -j 2 VERBOSE=1
cp bin/doxygen /usr/local/bin/doxygen
- name: add clang cxxflags
if: ${{ contains(matrix.cxx, 'clang') }}
run: |
echo "PATH=/usr/local/opt/llvm/bin:$PATH" >> $GITHUB_ENV
echo "CXXFLAGS=-stdlib=libc++" >> $GITHUB_ENV
- name: Prepare source files for doxygen
if: matrix.doc == 'ON'
working-directory: ./c++/nda
run: |
sed -e '/#include .*impl.*.hpp/{r _impl_basic_array_view_common.hpp' -e 'd' -e '}' basic_array.hpp > tmp_basic_array.hpp
sed -e '/#include .*impl.*.hpp/{r _impl_basic_array_view_common.hpp' -e 'd' -e '}' basic_array_view.hpp > tmp_basic_array_view.hpp
mv tmp_basic_array.hpp basic_array.hpp
mv tmp_basic_array_view.hpp basic_array_view.hpp
- name: Build nda without test coverage
if: matrix.cov == 'OFF'
env:
CC: ${{ matrix.cc }}
CXX: ${{ matrix.cxx }}
LIBRARY_PATH: /usr/local/opt/llvm/lib
run: |
mkdir build && cd build && cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/install -DBuild_Documentation=${{ matrix.doc }} -DPythonSupport=ON
make -j2 || make -j1 VERBOSE=1
- name: Build nda with test coverage
if: matrix.cov == 'ON'
env:
CC: ${{ matrix.cc }}
CXX: ${{ matrix.cxx }}
LIBRARY_PATH: /usr/local/opt/llvm/lib
CXXFLAGS: "${{ env.CXXFLAGS }} --coverage"
run: |
mkdir build && cd build && cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/install -DPythonSupport=OFF -DCMAKE_BUILD_TYPE=Debug
make -j2 || make -j1 VERBOSE=1
- name: Test nda
env:
DYLD_FALLBACK_LIBRARY_PATH: /usr/local/opt/llvm/lib
OPENBLAS_NUM_THREADS: "1"
run: |
cd build
ctest -j2 --output-on-failure
- name: Generate test coverage HTML output
if: matrix.cov == 'ON'
run: |
cd build
mkdir coverage
gcovr --gcov-executable "gcov-12" --root ../c++ --html-details -o coverage/coverage.html .
- name: ccache statistics
if: always()
run: ccache -sv
- uses: actions/cache/save@v3
if: always()
with:
path: ${{ env.CCACHE_DIR }}
key: ccache-${{ matrix.os }}-${{ matrix.cc }}-${{ github.run_id }}
- name: Deploy documentation
if: matrix.doc == 'ON' && github.ref == 'refs/heads/unstable'
uses: JamesIves/github-pages-deploy-action@v4
with:
folder: build/doc/html
branch: github.io
target-folder: docs/unstable
- name: Deploy test coverage
if: matrix.cov == 'ON' && github.ref == 'refs/heads/unstable'
uses: JamesIves/github-pages-deploy-action@v4
with:
folder: build/coverage
branch: github.io
target-folder: docs/coverage