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add morphology functions and tests #231

add morphology functions and tests

add morphology functions and tests #231

Workflow file for this run

# This workflows will upload a Python Package using Twine when a release is created
# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
name: tests
on:
push:
branches:
- main
tags:
- "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
pull_request:
branches:
- main
workflow_dispatch:
jobs:
test:
name: ${{ matrix.platform }} py${{ matrix.python-version }}
runs-on: ${{ matrix.platform }}
strategy:
matrix:
# platform: [ubuntu-latest, windows-latest, macos-latest]
platform: [ubuntu-latest, windows-latest]
python-version: ['3.9', '3.10', '3.11']
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
# these libraries enable testing on Qt on linux
- uses: tlambert03/setup-qt-libs@v1
# strategy borrowed from vispy for installing opengl libs on windows
- name: Install Windows OpenGL
if: runner.os == 'Windows'
run: |
git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git
powershell gl-ci-helpers/appveyor/install_opengl.ps1
# Install OpenCL for Linux
- name: Install OpenCL on Linux
if: runner.os == 'Linux'
run: sudo apt-get install -y pocl-opencl-icd
# Install OpenCL for Windows
- name: Install OpenCL on Windows
if: runner.os == 'Windows'
run: |
curl -LO https://registrationcenter-download.intel.com/akdlm/irc_nas/19170/intel_sdk_for_opencl_applications_2020.3.494.zip
unzip intel_sdk_for_opencl_applications_2020.3.494.zip
./intel_sdk_for_opencl_applications_2020.3.494/windows_sdk/Setup.exe /S
# Set up OpenCL environment variables
- name: Set up OpenCL environment variables
run: |
echo "PYOPENCL_CTX='0'" >> $GITHUB_ENV
echo "PYOPENCL_COMPILER_OUTPUT=1" >> $GITHUB_ENV
# note: if you need dependencies from conda, considering using
# setup-miniconda: https://github.com/conda-incubator/setup-miniconda
# and
# tox-conda: https://github.com/tox-dev/tox-conda
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install setuptools tox tox-gh-actions
# this runs the platform-specific tests declared in tox.ini
- name: Test with tox
uses: GabrielBB/xvfb-action@v1
with:
run: python -m tox
env:
PLATFORM: ${{ matrix.platform }}
- name: Coverage
uses: codecov/codecov-action@v2
with:
token: ${{ secrets.CODECOV_TOKEN }}
files: ./coverage.xml
flags: unittests
name: codecov-umbrella
fail_ci_if_error: true
deploy:
# this will run when you have tagged a commit, starting with "v*"
# and requires that you have put your twine API key in your
# github secrets (see readme for details)
needs: [test]
runs-on: ubuntu-latest
if: contains(github.ref, 'tags')
steps:
- uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: "3.x"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -U setuptools setuptools_scm wheel twine build
- name: Build and publish
env:
TWINE_USERNAME: __token__
TWINE_PASSWORD: ${{ secrets.TWINE_API_KEY }}
run: |
git tag
python -m build .
twine upload dist/*