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updated measure screenshots
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@TimMonko
TimMonko committed Sep 22, 2024
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78 changes: 78 additions & 0 deletions docs/examples/measure/data/.log.txt
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Expand Up @@ -1110,3 +1110,81 @@
2024-09-21 11:35:25,291 - Processing scene 0
2024-09-21 11:35:25,482 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_98_97_P9-G9.ome.tiff
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2024-09-21 19:49:24,828 -
Label Image: Labels: Morphology
Intensity Channels: ['Labels: DAPI Class']
Num. Files: 25
Label Directory: C:\Users\timmo\napari-ndev\docs\examples\measure\labels
Image Directory: None
Region Directory: None
Output Directory: C:\Users\timmo\napari-ndev\docs\examples\measure\data
ID Example: 2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_107_106_P1-H9.ome__0__Image:0
ID Regex Dict: {
'scene': r'(P\d{1,3}-\w+).ome',
'well': r'-(\w+).ome',
'HIC': r'(\d{1,3})HIC',
'date': r'(\d{4}-\d{2}-\d{2})',
}


Tx ID: well
Tx N Well: 96
Tx Dict: {
'chelation':{
'Control': ['B1:C12'],
'50uM DFP': ['D1:E12'],
'100uM DFP': ['F1:G12'],
'100uM DFO': ['A1:A12', 'H1:H12'],
},
}

2024-09-21 19:49:24,840 - Processing file 2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_107_106_P1-H9.ome.tiff
2024-09-21 19:49:25,011 - Processing scene 0
2024-09-21 19:49:25,186 - Processing file 2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_10_9_P8-B9.ome.tiff
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2024-09-21 19:49:25,408 - Processing file 2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_25_24_P8-C9.ome.tiff
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2024-09-21 19:49:25,632 - Processing file 2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_2_1_P4-A9.ome.tiff
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2024-09-21 19:49:25,849 - Processing file 2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_56_55_P8-D9.ome.tiff
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2024-09-21 19:49:26,068 - Processing file 2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_57_56_P4-E9.ome.tiff
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2024-09-21 19:49:26,288 - Processing file 2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_58_57_P3-E9.ome.tiff
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2024-09-21 19:49:26,507 - Processing file 2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_99_98_P8-G9.ome.tiff
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2024-09-21 19:49:26,725 - Processing file 2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_132_131_P20-H9.ome.tiff
2024-09-21 19:49:26,790 - Processing scene 0
2024-09-21 19:49:26,953 - Processing file 2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_36_35_P6-C9.ome.tiff
2024-09-21 19:49:27,012 - Processing scene 0
2024-09-21 19:49:27,176 - Processing file 2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_42_41_P7-C9.ome.tiff
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2024-09-21 19:49:27,393 - Processing file 2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_46_45_P6-D9.ome.tiff
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2024-09-21 19:49:27,618 - Processing file 2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_52_51_P10-D9.ome.tiff
2024-09-21 19:49:27,676 - Processing scene 0
2024-09-21 19:49:27,839 - Processing file 2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_70_69_P7-E9.ome.tiff
2024-09-21 19:49:27,898 - Processing scene 0
2024-09-21 19:49:28,060 - Processing file 2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_95_94_P11-F9.ome.tiff
2024-09-21 19:49:28,118 - Processing scene 0
2024-09-21 19:49:28,295 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_110_109_P4-H9.ome.tiff
2024-09-21 19:49:28,353 - Processing scene 0
2024-09-21 19:49:28,515 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_17_12_P6-B9.ome.tiff
2024-09-21 19:49:28,573 - Processing scene 0
2024-09-21 19:49:28,737 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_1_0_P8-B9.ome.tiff
2024-09-21 19:49:28,795 - Processing scene 0
2024-09-21 19:49:28,956 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_22_21_P7-B9.ome.tiff
2024-09-21 19:49:29,014 - Processing scene 0
2024-09-21 19:49:29,188 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_35_34_TR2-C9.ome.tiff
2024-09-21 19:49:29,246 - Processing scene 0
2024-09-21 19:49:29,518 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_4_3_P3-A9.ome.tiff
2024-09-21 19:49:29,576 - Processing scene 0
2024-09-21 19:49:29,741 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_56_55_P7-D9.ome.tiff
2024-09-21 19:49:29,799 - Processing scene 0
2024-09-21 19:49:29,961 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_62_61_P2-E9.ome.tiff
2024-09-21 19:49:30,017 - Processing scene 0
2024-09-21 19:49:30,178 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_84_83_P13-F9.ome.tiff
2024-09-21 19:49:30,239 - Processing scene 0
2024-09-21 19:49:30,402 - Processing file 2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_98_97_P9-G9.ome.tiff
2024-09-21 19:49:30,459 - Processing scene 0
96 changes: 48 additions & 48 deletions docs/examples/measure/data/measure_props_Morphology_grouped.csv
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id,date,HIC,well,scene,intensity_max-DAPI Class,label_count,area_mean
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2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_36_35_P6-C9.ome__0__Image:0,2024-08-07,48,C9,P6-C9,0.0,34,5.81516467
2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_36_35_P6-C9.ome__0__Image:0,2024-08-07,48,C9,P6-C9,1.0,3,355.05540734333334
2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_42_41_P7-C9.ome__0__Image:0,2024-08-07,48,C9,P7-C9,0.0,16,4.55286445625
2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_42_41_P7-C9.ome__0__Image:0,2024-08-07,48,C9,P7-C9,1.0,2,503.48328052000005
2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_46_45_P6-D9.ome__0__Image:0,2024-08-07,48,D9,P6-D9,0.0,59,0.5489475157627118
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id,date,HIC,well,scene,intensity_max-DAPI Class,chelation,label_count,area_mean
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2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_10_9_P8-B9.ome__0__Image:0,2024-08-07,24,B9,P8-B9,0.0,Control,12,1.0369878733333333
2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_10_9_P8-B9.ome__0__Image:0,2024-08-07,24,B9,P8-B9,1.0,Control,2,461.96269676000003
2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_25_24_P8-C9.ome__0__Image:0,2024-08-07,24,C9,P8-C9,0.0,Control,39,0.5769380361538462
2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_25_24_P8-C9.ome__0__Image:0,2024-08-07,24,C9,P8-C9,1.0,Control,1,297.45124434
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