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ToniWestbrook committed Mar 9, 2018
2 parents 165f9ee + ab09a97 commit eff9dac
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -62,7 +62,7 @@ Group flattened kingdoms (child ranks of domains [level 1]) to one file, group a
paladin-plugins.py @@taxonomy -i input.tsv -q 30 -t children -l 1 @@write first.txt @@taxonomy -i input.tsv -q 30 -t species -l 0 @@write second.txt @@plotting -s 20 15 -g 1 2 @@plotting -i first.txt -l 10 -c 0 0 @@plotting -i second.txt -l 10 -c 0 1 -o chart.png
```

Download a custom UniProt report with organism, protein names, go terms, comments, ec number, and kegg cross reference for fields, and save it to a file. The full list of available fields and database cross-references can be found on the [UniProt site](http://www.uniprot.org/help/query-fields):
Download a custom UniProt report with organism, protein names, go terms, comments, ec number, and kegg cross reference for fields, and save it to a file. The full list of available fields and database cross-references can be found on the [UniProt site](http://www.uniprot.org/help/uniprotkb_column_names):
```
paladin-plugins.py @@uniprot -i input.sam -c Organism "protein names" go comments ec "database(KEGG)" @@write report.txt
```
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