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ToposInstitute · Apr 9, 2024 · 3a27614 · 3a27614
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diff --git a/_images/machinery.png b/_images/machinery.png
diff --git a/_sources/acknowledgements.ipynb b/_sources/acknowledgements.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "ea7bec77",
+   "id": "329dadc8",
    "metadata": {},
    "source": [
     "# Credits\n",

diff --git a/_sources/afterword.ipynb b/_sources/afterword.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "f4d75346",
+   "id": "9d73d73c",
    "metadata": {},
    "source": [
     "# Afterword"

diff --git a/_sources/chp0.ipynb b/_sources/chp0.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "f292f879",
+   "id": "9784e532",
    "metadata": {},
    "source": [
     "# Chapter 0: Directed Graphs\n",

diff --git a/_sources/chp1-directed-graphs.ipynb b/_sources/chp1-directed-graphs.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "cf6071c2",
+   "id": "3c1bf7c3",
    "metadata": {},
    "source": [
     "# Chapter 1: Data\n",
@@ -87,7 +87,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "e4790055",
+   "id": "519af776",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -102,7 +102,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "e8a49c15",
+   "id": "5e36a2e7",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -114,7 +114,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "0ea8568f",
+   "id": "839f3908",
    "metadata": {},
    "source": [
     "## 1.3 On the importance of finding the right abstractions \n",

diff --git a/_sources/chp2-dwd.ipynb b/_sources/chp2-dwd.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "fdce631d",
+   "id": "fc858ae5",
    "metadata": {},
    "source": [
     "# Chapter 2: Dynamical Systems with Kiki and Bouba\n",
@@ -133,7 +133,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "344546c6",
+   "id": "339d842d",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -157,15 +157,15 @@
   },
   {
    "cell_type": "markdown",
-   "id": "53f320de",
+   "id": "a9aa804f",
    "metadata": {},
    "source": [
     "To simulate the code, we need to provide an **initial state (starting state)** for the bulb which will then get updated at every time instant as per the above update rule!"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "06fa279a",
+   "id": "c0862b4c",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -177,7 +177,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "5a312038",
+   "id": "db05b514",
    "metadata": {},
    "source": [
     "The simulation reuslts are exported as an animation showing that our simulation works (using Javis library) as shown below!\n",
@@ -235,7 +235,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "70a41a5e",
+   "id": "df51738e",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -259,7 +259,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "ea9b8b7a",
+   "id": "1abbe591",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -274,7 +274,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "c3a53440",
+   "id": "734ff90e",
    "metadata": {},
    "source": [
     "Animating the simulation results produces a result like that:\n",
@@ -430,7 +430,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "9e969482",
+   "id": "f6124098",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -460,15 +460,15 @@
   },
   {
    "cell_type": "markdown",
-   "id": "07945149",
+   "id": "1a50936c",
    "metadata": {},
    "source": [
     "We need to set the inital states carefully (in a meaningful way)! We set the controller to begin in `ON` for the RED light state and `OFF` for the other two lights (3 states for the controller). For the three light bulbs, we set RED to be `OFF`, GREEN to be `OFF`, and YELLOW to be `ON`. So in the next instant in time, controller will send it current state (RED) to the respective light bulbs and move to the next state of GREEN."
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "39c02092",
+   "id": "6aabb5ef",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -481,7 +481,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "3715ba64",
+   "id": "fdc674a2",
    "metadata": {},
    "source": [
     "Simulation of the results creates the following animation of traffic light! We got our initial states right!!\n",
@@ -599,7 +599,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "18f040e0",
+   "id": "45cc18c9",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -618,15 +618,15 @@
   },
   {
    "cell_type": "markdown",
-   "id": "64083dbb",
+   "id": "97901b80",
    "metadata": {},
    "source": [
     "We set the initial mood of Kiki to 4.5 and Bouba to be -4.5. We set their calmdown rates to be 5% (0.05) for Kiki and 3% (0.03) for Bouba."
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "9d0707db",
+   "id": "ed070eca",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -639,7 +639,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "d0fd5664",
+   "id": "f810c728",
    "metadata": {},
    "source": [
     "Are you ready to visualize their mood change when they are by themselves?\n",
@@ -713,7 +713,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "8aed7838",
+   "id": "9007734b",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -736,15 +736,15 @@
   },
   {
    "cell_type": "markdown",
-   "id": "5e7fa3db",
+   "id": "e2463539",
    "metadata": {},
    "source": [
     "It's time for visualization of change in mood! :) Let us set the initial mood of Kiki and Bouba, their susceptability factors, and their tolerance levels."
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "ebeef1cd",
+   "id": "9634b213",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -765,7 +765,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "a94ee4ab",
+   "id": "e8783b94",
    "metadata": {},
    "source": [
     "Here is the plot showing how Kiki and Bouba's moods oscillate during their 100 minutes conversation! They seem to struggle for the first 30 minutes with Kiki losing her excitment steadily. However, their moods meet somewhere above zero and they happily seem to resonate at their maximum excitement levels from there on!\n",
@@ -850,7 +850,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "13b25660",
+   "id": "93e8603a",
    "metadata": {},
    "source": [
     "```{code}\n",
@@ -869,7 +869,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "4b7503d9",
+   "id": "8692e429",
    "metadata": {},
    "source": [
     "The change in mood level of Kiki, Bouba, and Bouba's crew over 100 minutes!\n",

diff --git a/_sources/chp3-graph-relationships.ipynb b/_sources/chp3-graph-relationships.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "8e716822",
+   "id": "2a97b5a2",
    "metadata": {},
    "source": [
     "# Chapter 3: Graph Morphisms\n",

diff --git a/_sources/chp3-schemas.ipynb b/_sources/chp3-schemas.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "a98ea9a8",
+   "id": "2fcf73de",
    "metadata": {},
    "source": [
     "# Chapter 3: Blueprints\n",
@@ -118,7 +118,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "bd5204b0",
+   "id": "01a749f5",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -135,7 +135,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "d749384e",
+   "id": "88df0a36",
    "metadata": {},
    "source": [
     "And that's how AlgebraicJulia understands what we mean by a directed graph! Having given this general characterization of a directed graph blueprint we will next see how we can _modify_ this blueprint to define other kinds of graphs.\n",
@@ -290,7 +290,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "6932d53f",
+   "id": "c495b901",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -306,7 +306,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "29ee300f",
+   "id": "2d65a107",
    "metadata": {},
    "source": [
     "And that's how reflexive graphs can be defined in AlgebraicJulia! In the next chapter we'll see how to put this definition to use.\n",
@@ -395,7 +395,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "01ef4e95",
+   "id": "c6a6552b",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -413,7 +413,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "c2357568",
+   "id": "4ba10aed",
    "metadata": {},
    "source": [
     ":::{admonition} Pause and Ponder! \n",