Each subdirectory describes the steps taken for experiments described in the VIBES paper.

The versions of the various tools used are as follows:
esl-sfetch: Easel 0.48 (Nov 2020)
awk: GNU Awk 5.0.1, API: 2.0 (GNU MPFR 4.0.2, GNU MP 6.2.0)
hmmbuild: HMMER 3.3.2 (Nov 2020)
python3: Python 3.9.16
mv: (GNU coreutils) 9.2
hmmpress: HMMER 3.3.2 (Nov 2020)
nhmmer HMMER 3.3.2 (Nov 2020)

The version of VIBES used is version 0.9