Fast alignment-free similarity estimation methods in Rust.

Overview

This repository contains command-line executables that estimate the edit distance between query and reference sequences using:

1. Jaccard similarity of k-mer bags.
2. Jaccard similarity of strobemer bags.
3. maybe in the future, tensor slide sketch

Progress

• Unit tests for everything but strobemers

Development

• Develop unit tests for strobemers
• Write wrapper script to automate experiments