Reorganize hemeXtract

.github/workflows/build.yml

@@ -0,0 +1,36 @@
+name: build
+on: [push, pull_request]
+
+jobs:
+  build_debug:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest,macos-latest]
+        toolchain:
+          - {compiler: gcc, cxx: g++-12}
+          - {compiler: clang, cxx: clang++}
+    env:
+      CXX: ${{ matrix.toolchain.cxx }}
+
+    steps:
+      - name: Checkout source code
+        uses: actions/checkout@v3
+
+      - name: Install argp-standalone (MacOS)
+        if: contains(matrix.os, 'macos')
+        run: |
+          brew install argp-standalone
+
+      - name: Install libtirpc (Ubuntu)
+        if: contains(matrix.os,'ubuntu')
+        run: |
+          sudo apt-get install libtirpc-dev
+          export TIRPC_DIR=/usr
+
+      - name: Build hemeXtract
+        run: |
+          mkdir build && cd build
+          cmake .. -DCMAKE_BUILD_TYPE=Debug
+          make hemeXtract

CMakeLists.txt

@@ -0,0 +1,31 @@
+cmake_minimum_required(VERSION 3.15 FATAL_ERROR)
+
+project(hemeXtract
+    VERSION 0.1.0
+    LANGUAGES CXX)
+
+set(CMAKE_CXX_STANDARD 14)
+
+set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake")
+
+find_package(argp REQUIRED)
+
+if(CMAKE_SYSTEM_NAME STREQUAL "Linux")
+    find_package(TIRPC REQUIRED)
+endif()
+
+add_executable(hemeXtract 
+    src/hemeXtract.cc
+    src/Mapping.cc
+    src/Snapshot.cc
+    src/Compare.cc
+    src/HemeLBExtractionFile.cc)
+target_include_directories(hemeXtract PRIVATE include/)
+
+target_include_directories(hemeXtract PRIVATE ${argp_INCLUDE_DIRS})
+target_link_libraries(hemeXtract PRIVATE ${argp_LIBRARIES})
+
+if(TIRPC_FOUND)
+    target_include_directories(hemeXtract PRIVATE ${TIRPC_INCLUDE_DIRS})
+    target_link_libraries(hemeXtract PRIVATE ${TIRPC_LIBRARY})
+endif()