Quantitative Biomedicine Summer School

Network-based approaches in biomedicine

The tutorial runs on Jupyter notebook.

Downloading the tutorial materials

git clone https://github.com/UEFBiomedicalInformaticsLab/NetBio_Summer_2023.git

Intalling jupyter notebook with pip

pip install notebook

Install required python modules using pip

pip install numpy pandas networkx powerlaw matplotlib seaborn tqdm

Intalling jupyter notebook with anaconda

conda install -c anaconda jupyter

Install required python modules using anaconda

conda install -c anaconda -c conda-forge numpy pandas networkx powerlaw matplotlib seaborn tqdm

Launch using Binder

Name		Name	Last commit message	Last commit date
Latest commit History 37 Commits
Data		Data
Figures		Figures
.gitattributes		.gitattributes
.gitignore		.gitignore
1_Network_databases.ipynb		1_Network_databases.ipynb
2_Network_Data_Mining.ipynb		2_Network_Data_Mining.ipynb
3_NDM_applications.ipynb		3_NDM_applications.ipynb
Exercise_1.ipynb		Exercise_1.ipynb
Exercise_1_solutions.ipynb		Exercise_1_solutions.ipynb
Exercise_2.ipynb		Exercise_2.ipynb
Exercise_2_solutions.ipynb		Exercise_2_solutions.ipynb
Exercise_3.ipynb		Exercise_3.ipynb
Exercise_3_Python_solutions.ipynb		Exercise_3_Python_solutions.ipynb
README.md		README.md
requirements.txt		requirements.txt
separation.py		separation.py