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Remove mention of Atom editor
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jsbrittain committed Oct 22, 2024
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8 changes: 4 additions & 4 deletions technology_and_tooling/snakemake/basics.md
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@@ -75,10 +75,10 @@ Our first Snakemake rule maps reads of a given sample to a given
reference genome (see `tutorial-background`). For this, we will use the tool
[bwa](http://bio-bwa.sourceforge.net), specifically the subcommand
`bwa mem`. In the working directory, **create a new file** called
`Snakefile` with an editor of your choice. We propose to use the
[Atom](https://atom.io) editor, since it provides out-of-the-box syntax
highlighting for Snakemake. In the Snakefile, define the following rule:

`Snakefile` with an editor of your choice. We propose to use the integrated development
environment (IDE) tool Visual Studio Code, since it provides a good syntax highlighting
Snakemake extension and a remote extension for directly using the IDE on a remote
server. In the Snakefile, define the following rule:
```snakemake
rule bwa_map:
input:

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