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Use neutral Swedish name
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richelbilderbeek committed Dec 2, 2024
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8 changes: 4 additions & 4 deletions docs/cluster_guides/dardel_migration.md
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Expand Up @@ -182,7 +182,7 @@ darsync sshkey



Created SSH key: /home/richel/id_ed25519_pdc and /home/richel/id_ed25519_pdc.pub
Created SSH key: /home/sven/id_ed25519_pdc and /home/sven/id_ed25519_pdc.pub

Content of the public key:

Expand Down Expand Up @@ -583,7 +583,7 @@ which is a regular [Slurm](slurm.md) script.
![An example of a user having an account at PDC's Dardel HPC cluster](./img/supr_naiss_dardel_account.png)

> An example of a user having an account at PDC's Dardel HPC cluster.
> In this case, the username is `richelbi`
> In this case, the username is `svenbi`

???- question "How to find out where on Dardel I will transfer your data to?"

Expand Down Expand Up @@ -668,7 +668,7 @@ Replace `nais2024-23-9999` with the name of the folder you told Darsync to trans
Similar to this:

```bash
[sven@rackham1 ~]$ sbatch /home/richel/darsync_Documents.slurm
[sven@rackham1 ~]$ sbatch /home/sven/darsync_Documents.slurm
Submitted batch job 49021945 on cluster rackham
```

Expand Down Expand Up @@ -855,7 +855,7 @@ you can delete the files on Rackham that you've just transferred to Dardel.
#### T1. Full error message

```text
[sven@rackham1 ~]$ bash /domus/h1/richel/dardel_transfer_script.sh
[sven@rackham1 ~]$ bash /domus/h1/sven/dardel_transfer_script.sh
ssh: connect to host dardel.pdc.kth.se port 22: No route to host
rsync: connection unexpectedly closed (0 bytes received so far) [sender]
rsync error: unexplained error (code 255) at io.c(226) [sender=3.1.2]
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4 changes: 2 additions & 2 deletions docs/cluster_guides/disk_storage_guide.md
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Expand Up @@ -28,8 +28,8 @@ Use [uquota](../software/uquota.md)to check current disk usage and limits.
[sven@rackham3 ~]$ uquota
Your project Your File Area Unit Usage Quota Limit Over Quota
----------------- ----------------------- ------- -------- ----------- ----------
home /home/richel GiB 16.6 32
home /home/richel files 104165 300000
home /home/sven GiB 16.6 32
home /home/sven files 104165 300000
naiss2024-22-1202 /proj/r-py-jl-m-rackham GiB 0.0 128
naiss2024-22-1202 /proj/r-py-jl-m-rackham files 4 100000
naiss2024-22-49 /proj/introtouppmax GiB 5.1 128
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2 changes: 1 addition & 1 deletion docs/cluster_guides/login_transit.md
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Expand Up @@ -46,7 +46,7 @@ You are now logged in to Transit!
???- question "How does that look like?"

```console
sven@richel-N141CU:~/GitHubs/UPPMAX-documentation/docs/cluster_guides$ ssh [email protected]
sven@sven-N141CU:~/GitHubs/UPPMAX-documentation/docs/cluster_guides$ ssh [email protected]
[email protected]'s password:
Last login: Tue May 14 07:32:22 2024 from vpnpool188-185.anst.uu.se

Expand Down
4 changes: 2 additions & 2 deletions docs/getting_started/bianca_usage_prerequisites.md
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Expand Up @@ -64,8 +64,8 @@ Note that the 'Accounts' tab can be useful to verify your username.
![An example of a SUPR 'Accounts' tab](./img/supr_accounts.png)

> An example of a SUPR 'Accounts' tab.
> The example user has username `richel-sens2023598`,
> which means his/her UPPMAX username is `richel`
> The example user has username `sven-sens2023598`,
> which means his/her UPPMAX username is `sven`

You can become a member of an active SNIC SENS by:

Expand Down
10 changes: 5 additions & 5 deletions docs/getting_started/login_bianca_console_password.md
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Expand Up @@ -50,15 +50,15 @@ ssh [email protected]
???- question "How does this look like (when inside of SUNET)?"

```bash
ssh richel[email protected]
ssh sven[email protected]
```

After which a password will be asked. Go to the next step.

???- question "How does it look like when outside of SUNET?"

```bash
$ ssh richel[email protected]
$ ssh sven[email protected]
```

After which there is only waiting...
Expand Down Expand Up @@ -100,8 +100,8 @@ is the 2FA number.
???- question "How does this look like?"

```bash
sven@richel-N141CU:~/GitHubs/UPPMAX-documentation/docs/getting_started$ ssh richel[email protected]
richel[email protected]'s password:
sven@sven-N141CU:~/GitHubs/UPPMAX-documentation/docs/getting_started$ ssh sven[email protected]
sven[email protected]'s password:
```

After which you'll asked for another password. Go to the next step.
Expand Down Expand Up @@ -170,7 +170,7 @@ you are on the [login node](../cluster_guides/login_node.md) of your own virtual
```bash
_ _ ____ ____ __ __ _ __ __
| | | | _ \| _ \| \/ | / \ \ \/ / | System: sens2023598-bianca
| | | | |_) | |_) | |\/| | / _ \ \ / | User: richel
| | | | |_) | |_) | |\/| | / _ \ \ / | User: sven
| |_| | __/| __/| | | |/ ___ \ / \ |
\___/|_| |_| |_| |_/_/ \_\/_/\_\ |

Expand Down
2 changes: 1 addition & 1 deletion docs/getting_started/login_dardel.md
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Expand Up @@ -101,7 +101,7 @@ You will get a PDC account overnight.
![PDC login portal with username and key](./img/pdc_login_portal_with_username_and_key.png)

> Example screenshot of the PDC login portal.
> The Dardel username of this user is `richelbi`
> The Dardel username of this user is `svenbi`

### 3. Create SSH key pair

Expand Down
4 changes: 2 additions & 2 deletions docs/getting_started/rackham_usage_prerequisites.md
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Expand Up @@ -66,8 +66,8 @@ Note that the 'Accounts' tab can be useful to verify your username.
![An example of a SUPR 'Accounts' tab](./img/supr_accounts.png)

> An example of a SUPR 'Accounts' tab.
> The example user has username `richel-sens2023598`,
> which means his/her UPPMAX username is `richel`
> The example user has username `sven-sens2023598`,
> which means his/her UPPMAX username is `sven`

You can become a member of an active SNIC SENS by:

Expand Down
4 changes: 2 additions & 2 deletions docs/getting_started/snowy_usage_prerequisites.md
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Expand Up @@ -67,8 +67,8 @@ Note that the 'Accounts' tab can be useful to verify your username.
![An example of a SUPR 'Accounts' tab](./img/supr_accounts.png)

> An example of a SUPR 'Accounts' tab.
> The example user has username `richel-sens2023598`,
> which means his/her UPPMAX username is `richel`
> The example user has username `sven-sens2023598`,
> which means his/her UPPMAX username is `sven`

You can become a member of an active SNIC SENS by:

Expand Down
4 changes: 2 additions & 2 deletions docs/software/bianca_file_transfer_using_filezilla.md
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Expand Up @@ -70,15 +70,15 @@ In the 'New Site' dialog, use all standards, except:

- Set protocol to 'SFTP - SSH File Transfer Protocol'
- Set host to `bianca-sftp.uppmax.uu.se`
- Set user to `[username]-[project]`, e.g. `richel-sens123456`
- Set user to `[username]-[project]`, e.g. `sven-sens123456`

???- tip "How does that look like?"

It looks similar to these:

![FileZilla settings for a user](./img/filezilla_setup_bianca_pavlin.png)

![FileZilla settings for another user](./img/filezilla_setup_bianca_richel.png)
![FileZilla settings for another user](./img/filezilla_setup_bianca_sven.png)

!!! tip "Storing a password is useless"

Expand Down
2 changes: 1 addition & 1 deletion docs/software/bianca_file_transfer_using_sftp.md
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Expand Up @@ -65,7 +65,7 @@ and the `sftp` prompt.
Best regards,
UPPMAX
richel[email protected]'s password:
sven[email protected]'s password:
Connected to bianca-sftp.uppmax.uu.se.
sftp>
```
Expand Down
2 changes: 1 addition & 1 deletion docs/software/bianca_file_transfer_using_winscp.md
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Expand Up @@ -37,7 +37,7 @@ For that site, use all standards, except:

- Set file protocol to 'SFTP'
- Set host name to `bianca-sftp.uppmax.uu.se`
- Set user name to `[username]-[project]`, e.g. `richel-sens123456`
- Set user name to `[username]-[project]`, e.g. `sven-sens123456`
- **Do not set password! Provide your UPPMAX password followed immediately by the UPPMAX 2FA when asked by the interactive login.**

???- tip "How does that look like?"
Expand Down
4 changes: 2 additions & 2 deletions docs/software/create_singularity_container_for_r_package.md
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Expand Up @@ -69,7 +69,7 @@ Which will build a Singularity container called `my_container.sif`.
You output will be similar to this:

```bash
sven@richel-N141CU:~/temp$ sudo singularity build my_container.sif Singularity
sven@sven-N141CU:~/temp$ sudo singularity build my_container.sif Singularity
INFO: Starting build...
INFO: Fetching OCI image...
307.6MiB / 307.6MiB [================================================================================================================================================] 100 % 0.0 b/s 0s
Expand Down Expand Up @@ -265,7 +265,7 @@ Run the container on the R script:
You output will be similar to this:

```bash
sven@richel-N141CU:~/temp$ ./my_container.sif my_r_script.R
sven@sven-N141CU:~/temp$ ./my_container.sif my_r_script.R
function (y)
{
if (!is.matrix(y))
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ Which will build a Singularity container called `my_container.sif`.
You output will be similar to this:

```bash
sven@richel-N141CU:~/temp$ sudo singularity build my_container.sif Singularity
sven@sven-N141CU:~/temp$ sudo singularity build my_container.sif Singularity
INFO: Starting build...
INFO: Fetching OCI image...
307.6MiB / 307.6MiB [================================================================================================================================================] 100 % 0.0 b/s 0s
Expand Down
4 changes: 2 additions & 2 deletions docs/software/finishedjobinfo.md
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Expand Up @@ -72,12 +72,12 @@ for example `finishedjobinfo -j 44981366`.

```bash
[sven@rackham3 ~]$ finishedjobinfo -j 44981366
2024-02-09 12:30:37 jobid=44981366 jobstate=TIMEOUT username=richel account=staff nodes=r35 procs=1 partition=core qos=normal jobname=run_beast2.sh maxmemory_in_GiB=0.1 maxmemory_node=r35 timelimit=00:01:00 submit_time=2024-02-09T12:27:29 start_time=2024-02-09T12:29:18 end_time=2024-02-09T12:30:37 runtime=00:01:19 margin=-00:00:19 queuetime=00:01:49
2024-02-09 12:30:37 jobid=44981366 jobstate=TIMEOUT username=sven account=staff nodes=r35 procs=1 partition=core qos=normal jobname=run_beast2.sh maxmemory_in_GiB=0.1 maxmemory_node=r35 timelimit=00:01:00 submit_time=2024-02-09T12:27:29 start_time=2024-02-09T12:29:18 end_time=2024-02-09T12:30:37 runtime=00:01:19 margin=-00:00:19 queuetime=00:01:49
```

> 2024-02-09 12:30:37
> jobid=44981366
> jobstate=TIMEOUT username=richel account=staff
> jobstate=TIMEOUT username=sven account=staff
> nodes=r35
> procs=1 partition=core qos=normal jobname=run_beast2.sh maxmemory_in_GiB=0.1 maxmemory_node=r35 timelimit=00:01:00 submit_time=2024-02-09T12:27:29 start_time=2024-02-09T12:29:18 end_time=2024-02-09T12:30:37 runtime=00:01:19 margin=-00:00:19 queuetime=00:01:49

Expand Down
2 changes: 1 addition & 1 deletion docs/software/metontiime.md
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Expand Up @@ -7,7 +7,7 @@ It is not installed as a module.

???- tip "User tickets (for UPPMAX staff)"

[ticket_287014](https://github.com/richelbilderbeek/ticket_287014)
[ticket_287014](https://github.com/svenbilderbeek/ticket_287014)

## Links

Expand Down
4 changes: 2 additions & 2 deletions docs/software/rackham_file_transfer_using_filezilla.md
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Expand Up @@ -65,13 +65,13 @@ In FileZilla's site manager:
- for that site, use all standards, except:
- Set protocol to 'SFTP - SSH File Transfer Protocol'
- Set host to `rackham.uppmax.uu.se`
- Set user to `[username]`, e.g. `richel`
- Set user to `[username]`, e.g. `sven`

???- tip "How does that look like?"

It looks similar to this:

![FileZilla configured for Rackham](./img/filezilla_setup_rackham_richel.png)
![FileZilla configured for Rackham](./img/filezilla_setup_rackham_sven.png)

### 5. Connect to the site

Expand Down
2 changes: 1 addition & 1 deletion docs/software/rackham_file_transfer_using_winscp.md
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Expand Up @@ -20,4 +20,4 @@ To transfer files to/from Rackham using WinSCP, do:
- For that site, use all standards, except:
- Set file protocol to 'SFTP'
- Set host name to `rackham.uppmax.uu.se`
- Set user name to `[username]`, e.g. `richel`
- Set user name to `[username]`, e.g. `sven`
6 changes: 3 additions & 3 deletions docs/software/rclone.md
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Expand Up @@ -67,7 +67,7 @@ rclone config file

```console
Configuration file doesn't exist, but rclone will use this path:
/home/richel/.config/rclone/rclone.conf
/home/sven/.config/rclone/rclone.conf
```

## Using the Rclone web interface
Expand All @@ -86,9 +86,9 @@ rclone rcd --rc-web-gui
Here is some example output:

```console
2024/04/02 08:31:59 ERROR : Error reading tag file at /home/richel/.cache/rclone/webgui/tag
2024/04/02 08:31:59 ERROR : Error reading tag file at /home/sven/.cache/rclone/webgui/tag
2024/04/02 08:31:59 NOTICE: A new release for gui (v2.0.5) is present at https://github.com/rclone/rclone-webui-react/releases/download/v2.0.5/currentbuild.zip
2024/04/02 08:31:59 NOTICE: Downloading webgui binary. Please wait. [Size: 4763452, Path : /home/richel/.cache/rclone/webgui/v2.0.5.zip]
2024/04/02 08:31:59 NOTICE: Downloading webgui binary. Please wait. [Size: 4763452, Path : /home/sven/.cache/rclone/webgui/v2.0.5.zip]
2024/04/02 08:32:00 NOTICE: Unzipping webgui binary
2024/04/02 08:32:01 NOTICE: Serving Web GUI
2024/04/02 08:32:01 NOTICE: Serving remote control on http://localhost:5572/
Expand Down
2 changes: 1 addition & 1 deletion docs/software/rstudio.md
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Expand Up @@ -25,7 +25,7 @@ Using RStudio differs per UPPMAX cluster:


```bash
[sven@r210 richel]$ module spider Rstudio
[sven@r210 sven]$ module spider Rstudio

----------------------------------------------------------------------------
RStudio:
Expand Down
6 changes: 3 additions & 3 deletions docs/software/rstudio_on_rackham.md
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Expand Up @@ -106,7 +106,7 @@ module load R/4.3.1 R_packages/4.3.1 RStudio/2023.12.1-402
Your output will be similar to:

```bash
[sven@r210 richel]$ module load R/4.3.1 R_packages/4.3.1 RStudio/2023.06.2-561
[sven@r210 sven]$ module load R/4.3.1 R_packages/4.3.1 RStudio/2023.06.2-561
R/4.3.1: Nearly all CRAN and BioConductor packages are installed and available by loading
the module R_packages/4.3.1
R_packages/4.3.1: Note that loading some spatial analysis packages, especially geo-related packages, might
Expand All @@ -133,9 +133,9 @@ module load R/4.3.1 R_packages/4.3.1 RStudio/2023.12.1-402
Here is how it looks like:

```bash
[sven@r482 richel]$ module load RStudio/2023.06.2-561
[sven@r482 sven]$ module load RStudio/2023.06.2-561
RStudio/2023.06.2-561: Sandboxing is not enabled for RStudio at UPPMAX. See 'module help RStudio/2023.06.2-561' for more information
[sven@r482 richel]$ module help RStudio/2023.06.2-561
[sven@r482 sven]$ module help RStudio/2023.06.2-561

--------------------------------------------------- Module Specific Help for "RStudio/2023.06.2-561" ----------------------------------------------------
RStudio - use RStudio 2023.06.2-561
Expand Down
4 changes: 2 additions & 2 deletions docs/software/rsync_on_bianca.md
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Expand Up @@ -20,7 +20,7 @@ It can be made to work (by using [transit](../cluster_guides/transit.md)), as de


```console
sven@richel-N141CU:~$ rsync my_local_file.txt richel[email protected]:/richel-sens2016001
sven@sven-N141CU:~$ rsync my_local_file.txt sven[email protected]:/sven-sens2016001

Hi!

Expand All @@ -41,7 +41,7 @@ It can be made to work (by using [transit](../cluster_guides/transit.md)), as de
Best regards,
UPPMAX

richel[email protected]'s password:
sven[email protected]'s password:
protocol version mismatch -- is your shell clean?
(see the rsync manpage for an explanation)
rsync error: protocol incompatibility (code 2) at compat.c(622) [sender=3.2.7]
Expand Down
2 changes: 1 addition & 1 deletion docs/software/tabix.md
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Expand Up @@ -15,7 +15,7 @@ module spider tabix
The output may look like this:

```bash
[sven@rackham1 richel]$ module spider tabix
[sven@rackham1 sven]$ module spider tabix

----------------------------------------------------------------------------
tabix: tabix/0.2.6
Expand Down
2 changes: 1 addition & 1 deletion docs/software/tkinter.md
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Expand Up @@ -24,7 +24,7 @@ import tkinter

## History

In January 2024, there was a [Tkinter UPPMAX ticket](https://github.com/richelbilderbeek/ticket_286232).
In January 2024, there was a [Tkinter UPPMAX ticket](https://github.com/svenbilderbeek/ticket_286232).
and documentation how to load `tkinter`.

At that time, doing:
Expand Down
6 changes: 3 additions & 3 deletions docs/software/transit_file_transfer_using_filezilla.md
Original file line number Diff line number Diff line change
Expand Up @@ -67,13 +67,13 @@ For that site, use all standards, except:

- Set protocol to 'SFTP - SSH File Transfer Protocol'
- Set host to `transit.uppmax.uu.se`
- Set user to `[username]`, e.g. `richel`
- Set user to `[username]`, e.g. `sven`

???- tip "How does that look like?"

It looks similar to this:

![Setup the site done](../software/img/filezilla_setup_transit_richel.png)
![Setup the site done](../software/img/filezilla_setup_transit_sven.png)

### 7. Click 'Connect'

Expand Down Expand Up @@ -130,4 +130,4 @@ To transfer files to/from Transit using WinSCP, do:
- For that site, use all standards, except:
- Set file protocol to 'SFTP'
- Set host name to `transit.uppmax.uu.se`
- Set user name to `[username]`, e.g. `richel`
- Set user name to `[username]`, e.g. `sven`
2 changes: 1 addition & 1 deletion docs/software/transit_file_transfer_using_winscp.md
Original file line number Diff line number Diff line change
Expand Up @@ -33,4 +33,4 @@ To transfer files to/from Transit using WinSCP, do:
- For that site, use all standards, except:
- Set file protocol to 'SFTP'
- Set host name to `transit.uppmax.uu.se`
- Set user name to `[username]`, e.g. `richel`
- Set user name to `[username]`, e.g. `sven`

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