Merge pull request #393 from UW-GAC/feature/add-search-functionality-… #849
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| name: ci-tox | |
| # Enable Buildkit and let compose use it to speed up image building | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| COMPOSE_DOCKER_CLI_BUILD: 1 | |
| on: | |
| pull_request: | |
| branches: [ "master", "main" ] | |
| paths-ignore: [ "docs/**" ] | |
| push: | |
| branches: [ "master", "main" ] | |
| paths-ignore: [ "docs/**" ] | |
| jobs: | |
| linter: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Code Repository | |
| uses: actions/[email protected] | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| - name: Run pre-commit | |
| uses: pre-commit/[email protected] | |
| sqlite: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 10 | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade tox tox-gh-actions | |
| - name: Test with tox | |
| # Sometimes tox fails to build the package correctly and intermittently throws an OSError or BadZipFile error. | |
| # Upon retry, it seems to work. | |
| uses: nick-fields/retry@v2 | |
| id: retry-sqlite | |
| with: | |
| timeout_minutes: 10 | |
| max_attempts: 3 | |
| retry_on: error | |
| command: tox | |
| env: | |
| DBBACKEND: sqlite3 | |
| DBNAME: ":memory:" | |
| - name: Upload coverage data | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-data | |
| path: ".coverage.*" | |
| mysql: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 10 | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| mariadb-version: ["10.4"] | |
| services: | |
| database: | |
| image: mariadb:${{ matrix.mariadb-version }} | |
| env: | |
| MYSQL_ROOT_PASSWORD: rootpw | |
| MYSQL_DATABASE: test | |
| ports: | |
| - 3306:3306 | |
| options: --tmpfs /var/lib/mysql | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade tox tox-gh-actions | |
| - name: Test with tox | |
| # Sometimes tox fails to build the package correctly and intermittently throws an OSError or BadZipFile error. | |
| # Upon retry, it seems to work. | |
| uses: nick-fields/retry@v2 | |
| id: retry-mysql | |
| with: | |
| timeout_minutes: 10 | |
| max_attempts: 3 | |
| retry_on: error | |
| command: tox | |
| env: | |
| DBBACKEND: mysql | |
| DBNAME: test | |
| DBUSER: root | |
| DBPASSWORD: rootpw | |
| DBHOST: 127.0.0.1 | |
| - name: Upload coverage data | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-data | |
| path: ".coverage.*" | |
| coverage: | |
| name: Check coverage. | |
| runs-on: "ubuntu-latest" | |
| needs: [sqlite, mysql] | |
| steps: | |
| - uses: actions/[email protected] | |
| - uses: actions/setup-python@v4 | |
| with: | |
| # Use latest, so it understands all syntax. | |
| python-version: "3.10" | |
| - run: python -m pip install --upgrade coverage[toml] django==3.2.16 django-coverage-plugin | |
| - name: Download coverage data. | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: coverage-data | |
| - name: Combine coverage & check percentage | |
| run: | | |
| python -m coverage combine | |
| python -m coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |