Add ctest script to CI. #3
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| ### | |
| # Build hdf5 dependencies and cache them in a combined directory. | |
| ### | |
| name: Run CDash Ubuntu/Linux netCDF Tests | |
| on: [pull_request, workflow_dispatch] | |
| jobs: | |
| build-deps-cdash: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.10.8, 1.12.2, 1.14.0 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen openssl | |
| ### | |
| # Installing libhdf5 | |
| ### | |
| - name: Cache libhdf5-${{ matrix.hdf5 }} | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Build libhdf5-${{ matrix.hdf5 }} | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2 | |
| tar -jxf hdf-4.2.15.tar.bz2 | |
| pushd hdf-4.2.15 | |
| ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-hdf4-xdr | |
| make -j | |
| make install -j | |
| popd | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| pushd hdf5-${{ matrix.hdf5 }} | |
| ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib | |
| make -j | |
| make install -j | |
| popd | |
| build-deps-parallel: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.14.0 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev | |
| ### | |
| # Installing libhdf5 | |
| ### | |
| - name: Cache libhdf5-parallel-${{ matrix.hdf5 }} | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Build libhdf5-${{ matrix.hdf5 }}-pnetcdf-1.12.3 | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2 | |
| tar -jxf hdf-4.2.15.tar.bz2 | |
| pushd hdf-4.2.15 | |
| CC=mpicc ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-parallel --enable-hdf4-xdr | |
| make -j | |
| make install -j | |
| popd | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| pushd hdf5-${{ matrix.hdf5 }} | |
| CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib --enable-parallel | |
| make -j | |
| make install -j | |
| popd | |
| wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz | |
| tar -zxf pnetcdf-1.12.3.tar.gz | |
| pushd pnetcdf-1.12.3 | |
| CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} | |
| make -j | |
| make install -j | |
| popd | |
| ### | |
| # Run CTest Serial Script | |
| ### | |
| nc-ctest-serial: | |
| needs: build-deps-cdash | |
| runs-on: ubuntu-latest | |
| environment: CDashCI | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.10.8, 1.12.2, 1.14.0 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV | |
| ### | |
| # Fetch Cache | |
| ### | |
| - name: Fetch HDF Cache | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| - name: Run ctest serial script | |
| shell: bash -l {0} | |
| run: | | |
| mkdir build | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 -V -S ../ctest_scripts/ctest_serial.ctest | |
| - name: Verbose Output if CTest Failure | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV | |
| if: ${{ failure() }} |