Writing & Running Bioinformatics Pipelines

Note

The following was written to accompany brief presentations at UNSW but should be relatively self-contained aside from various HPC/machine names.

Nextflow is one approach to biological pipelines that has gained some traction. It has more features compared to CWL and Snakemake, at the expense of some complexity.

1. Nextflow Starter
   Scatter Gather Explained Using Three Examples.
   View.
2. nf-core Starter
   Running & Editing Community Workflows.
   View.