add label for bamfile indexing and increase memory

WEHI-ResearchComputing · May 31, 2024 · c6b354f · c6b354f
1 parent 0f37b36
commit c6b354f
Show file tree

Hide file tree

Showing 2 changed files with 10 additions and 2 deletions.
diff --git a/config/modules.config b/config/modules.config
@@ -16,11 +16,19 @@ process {
     withLabel:BWAAlign {
         queue='regular'
         cpus = 5
-        memory={ 8.GB * task.attempt }
+        memory={ 4.GB * task.attempt }
         time='12h'
         errorStrategy ={ 'retry'  }
         maxRetries= 5
     }
+    withLabel:IndexDedup {
+        queue='regular'
+        cpus = 5
+        memory={ 8.GB * task.attempt }
+        time='8h'
+        errorStrategy ={ 'retry'  }
+        maxRetries= 5
+    }
     withLabel:Write {
         queue='regular'
         cpus = 1

diff --git a/modules/bwa.nf b/modules/bwa.nf
@@ -22,7 +22,7 @@ process Bwa {
 }
 
 process Index {
-    label 'BWAAlign'
+    label 'IndexDedup'
     tag "${sampleId}"
     publishDir "${params.outdir}/align", mode: 'copy'