Add citations of this package

WIAS-PDELib · Feb 5, 2024 · 7039d76 · 7039d76 · j-fu · Feb 6, 2024
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diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "VoronoiFVM"
 uuid = "82b139dc-5afc-11e9-35da-9b9bdfd336f3"
 authors = ["Jürgen Fuhrmann <[email protected]>", "Dilara Abdel", "Jan Weidner", "Alexander Seiler", "Patricio Farrell", "Matthias Liero"]
-version = "1.18.3"
+version = "1.18.4"
 
 [deps]
 BandedMatrices = "aae01518-5342-5314-be14-df237901396f"

diff --git a/docs/Project.toml b/docs/Project.toml
@@ -4,6 +4,7 @@ CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+DocumenterCitations = "daee34ce-89f3-4625-b898-19384cb65244"
 ExampleJuggler = "3bbe58f8-ed81-4c4e-a134-03e85fcf4a1a"
 ExtendableGrids = "cfc395e8-590f-11e8-1f13-43a2532b2fa8"
 ExtendableSparse = "95c220a8-a1cf-11e9-0c77-dbfce5f500b3"

diff --git a/docs/make.jl b/docs/make.jl
@@ -1,9 +1,14 @@
-using Documenter, ExampleJuggler, VoronoiFVM
+using Documenter, ExampleJuggler, VoronoiFVM, DocumenterCitations
 using ExtendableGrids, GridVisualize, LinearAlgebra, OrdinaryDiffEq, RecursiveArrayTools, SciMLBase
 
 function make(; with_examples = true,
               with_notebooks = true)
 
+    bib = CitationBibliography(
+        joinpath(@__DIR__, "src", "citations.bib");
+        style=:numeric
+    )
+
     ExampleJuggler.verbose!(true)
 
     cleanexamples()
@@ -58,13 +63,16 @@ function make(; with_examples = true,
 
     makedocs(; sitename = "VoronoiFVM.jl",
              modules = [VoronoiFVM, VoronoiFVM.SolverStrategies],
+             plugins = [bib],
              checkdocs = :all,
              clean = false,
              doctest = false,
              warnonly = true,
              authors = "J. Fuhrmann",
              repo = "https://github.com/j-fu/VoronoiFVM.jl",
-             format = Documenter.HTML(; size_threshold_ignore,  mathengine = MathJax3()),
+             format = Documenter.HTML(; size_threshold_ignore,
+                                       assets=String["assets/citations.css"],
+                                      mathengine = MathJax3()),
              pages)
 
 

diff --git a/docs/src/assets/citations.css b/docs/src/assets/citations.css
@@ -0,0 +1,17 @@
+.citation dl {
+  display: grid;
+  grid-template-columns: max-content auto; }
+.citation dt {
+  grid-column-start: 1; }
+.citation dd {
+  grid-column-start: 2;
+  margin-bottom: 0.75em; }
+.citation ul {
+ padding: 0 0 2.25em 0;
+ margin: 0;
+ list-style: none;}
+.citation ul li {
+ text-indent: -2.25em;
+ margin: 0.33em 0.5em 0.5em 2.25em;}
+.citation ol li {
+ padding-left:0.75em;}
diff --git a/docs/src/citations.bib b/docs/src/citations.bib
@@ -0,0 +1,187 @@
+@inproceedings{matera2023reduced,
+  title={Reduced Basis Approach for Convection-Diffusion Equations with Non-linear Boundary Reaction Conditions},
+  author={Matera, S and Merdon, C and Runge, D},
+  booktitle={International Conference on Finite Volumes for Complex Applications},
+  pages={335--343},
+  year={2023},
+  doi = {10.1007/978-3-031-40864-9_28},
+  organization={Springer}
+}
+
+@article{spetzler2023role,
+  title={The Role of Vacancy Dynamics in Two-Dimensional Memristive Devices},
+  author={Spetzler, Benjamin and Abdel, Dilara and Schwierz, Frank and Ziegler, Martin and Farrell, Patricio},
+  journal={Advanced Electronic Materials},
+  pages={2300635},
+  year={2023},
+  doi = {10.1002/aelm.202300635},
+  publisher={Wiley Online Library}
+}
+
+@article{scholz2023hestia,
+  title={Hestia.jl: A Julia Library for Heat Conduction Modeling with Boundary Actuation.},
+  author={Scholz, Stephan and Berger, Lothar},
+  journal={Simul. Notes Eur.},
+  volume={33},
+  number={1},
+  url = {https://www.sne-journal.org/fileadmin/user_upload_sne/SNE_Issues_OA/SNE_33_1/articles/sne.33.1.10634.sn.OA.pdf},
+  pages={27--30},
+  year={2023}
+}
+
+@inproceedings{scharer2023transient,
+  title={A Transient Non-isothermal Cell Performance Model for Organic Redox Flow Batteries},
+  author={Sch{\"a}rer, Roman Pascal and Schumacher, J{\"u}rgen},
+  booktitle={19th Symposium on Modeling and Experimental Validation of Electrochemical Energy Technologies (ModVal), Duisburg, Germany, 21-23 March 2023},
+  url = {https://flowbatteryforum.com/wp-content/uploads/2023/06/2355-Roman-Schaerer-Poster.pdf},
+  year={2023}
+}
+
+@inproceedings{fuhrmann2023two,
+  title={Two Entropic Finite Volume Schemes for a Nernst--Planck--Poisson System with Ion Volume Constraints},
+  author={Fuhrmann, J{\"u}rgen and Gaudeul, Beno{\^\i}t and Keller, Christine},
+  booktitle={International Conference on Finite Volumes for Complex Applications},
+  pages={285--294},
+  year={2023},
+  organization={Springer},
+  doi= {10.1007/978-3-031-40864-9_23}
+}
+
+@article{VagnerPavelkaFuhrmannKlika2022,
+title = {A multiscale thermodynamic generalization of {M}axwell-{S}tefan diffusion equations and of the dusty gas model},
+journal = {International Journal of Heat and Mass Transfer},
+volume = {199},
+pages = {123405},
+year = {2022},
+doi = {10.1016/j.ijheatmasstransfer.2022.123405},
+author = {P. V{\'a}gner and M. Pavelka and J. Fuhrmann and V. Klika},
+}
+
+@Article{MilosEtAlxJES2022,
+ author = {
+Milo{\v{s}}, V. and
+V{\'a}gner, P. and
+Bud{\'a}{\v{c}}, D. and
+Carda, M. and
+Paidar, M. and
+Fuhrmann, J.
+and 
+Bouzek, K.
+},
+ title = {Generalized {P}oisson-{N}ernst-{P}lanck-based physical model of an {O2} | {LSM} | {YSZ} electrode},
+  year = 2022,
+  journal = "Journal of the Electrochemical Society",
+  doi="10.1149/1945-7111/ac4a51",
+  number=169,
+  pages=044505
+}
+
+
+@article{xiao2022julia,
+  title={Julia language in computational mechanics: A new competitor},
+  author={Xiao, Lei and Mei, Gang and Xi, Ning and Piccialli, Francesco},
+  journal={Archives of Computational Methods in Engineering},
+  volume={29},
+  number={3},
+  pages={1713--1726},
+  year={2022},
+  doi = {10.1007/s11831-021-09636-0},
+  publisher={Springer}
+}
+
+@article{gaudeul2022entropy,
+  title={Entropy and convergence analysis for two finite volume schemes for a Nernst--Planck--Poisson system with ion volume constraints},
+  author={Gaudeul, Beno{\^\i}t and Fuhrmann, J{\"u}rgen},
+  journal={Numerische Mathematik},
+  volume={151},
+  number={1},
+  pages={99--149},
+  year={2022},
+  doi = {10.1007/s00211-022-01279-y},
+  publisher={Springer}
+}
+
+@inproceedings{martins2022semiconductor,
+  title={From Semiconductor to Transistor-Level: Modeling, Simulation, and Layout Rendering Tools},
+  author={Martins, Jo{\~a}o R Raposo de O and Alves, Francisco and Ferreira, Pietro Maris},
+  booktitle={Colloque du GdR SOC2},
+  url = {https://hal.science/hal-03690082},
+  note = {hal-03690082},
+  year={2022}
+}
+
+@mastersthesis{jambrich2022consistent,
+  title={Consistent non-equilibrium thermodynamic modeling of hydrogen fuel cells},
+  author={Jambrich, Jakub},
+  year={2022},
+  school={Univerzita Karlova, Matematicko-fyzik{\'a}ln{\'\i} fakulta},
+  Url = {https://dspace.cuni.cz/bitstream/handle/20.500.11956/174167/120418015.pdf}
+}
+
+@mastersthesis{chinnery2022tcad,
+  title={TCAD-Informed Surrogate Models of Semiconductor Devices},
+  author={Chinnery, Samuel B},
+  year={2022},
+  url = {https://dspace.mit.edu/handle/1721.1/144946},
+  school={Massachusetts Institute of Technology}
+}
+
+@article{abdel2021modelling,
+  title={Modelling charge transport in perovskite solar cells: Potential-based and limiting ion depletion},
+  author={Abdel, Dilara and V{\'a}gner, Petr and Fuhrmann, J{\"u}rgen and Farrell, Patricio},
+  journal={Electrochimica Acta},
+  volume={390},
+  pages={138696},
+  year={2021},
+  doi = {10.1016/j.electacta.2021.138696},
+  publisher={Elsevier}
+}
+
+
+@article{abdel2021assessing,
+  title={Assessing the quality of the excess chemical potential flux scheme for degenerate semiconductor device simulation},
+  author={Abdel, Dilara and Farrell, Patricio and Fuhrmann, J{\"u}rgen},
+  journal={Optical and Quantum Electronics},
+  volume={53},
+  pages={1--10},
+  year={2021},
+  doi = "10.1007/s11082-021-02803-4",
+  publisher={Springer}
+}
+
+
+@article{cances2021numerical,
+  title={A numerical-analysis-focused comparison of several finite volume schemes for a unipolar degenerate drift-diffusion model},
+  author={Canc{\`e}s, Cl{\'e}ment and Chainais-Hillairet, Claire and Fuhrmann, J{\"u}rgen and Gaudeul, Beno{\^\i}t},
+  journal={IMA Journal of Numerical Analysis},
+  volume={41},
+  number={1},
+  pages={271--314},
+  year={2021},
+  doi = {10.1093/imanum/draa002},
+  publisher={Oxford University Press}
+}
+
+@article{park2021mathematical,
+  title={Mathematical modeling and analysis of microwave-assisted freeze-drying in biopharmaceutical applications},
+  author={Park, Jinwoo and Cho, Jae Hyun and Braatz, Richard D},
+  journal={Computers \& Chemical Engineering},
+  volume={153},
+  pages={107412},
+  year={2021},
+  doi = {10.1016/j.compchemeng.2021.107412},
+  publisher={Elsevier}
+}
+
+@inproceedings{cances2020four,
+  title={On four numerical schemes for a unipolar degenerate drift-diffusion model},
+  author={Canc{\`e}s, Cl{\'e}ment and Hillairet, Claire Chainais and Fuhrmann, J{\"u}rgen and Gaudeul, Beno{\^\i}t},
+  booktitle={Finite Volumes for Complex Applications IX-Methods, Theoretical Aspects, Examples: FVCA 9, Bergen, Norway, June 2020 IX},
+  pages={163--171},
+  year={2020},
+  doi="10.1007/978-3-030-43651-3_13",
+  organization={Springer}
+}
+
+
+
diff --git a/docs/src/index.md b/docs/src/index.md
@@ -5,5 +5,13 @@ $(read("../../README.md",String))
 """)
 ````
 
+# Papers and preprints using this package
+
+Please consider a pull request if you have published work which could be added to this list.
+
+
+```@bibliography
+*
+```