Merge branch 'master' of https://github.com/nf-core/modules #6
test.yml
on: push
pytest-changes
6s
nf-test-changes
6s
Matrix: nf-core-lint
Matrix: pytest
Matrix: nf-test
confirm-pass
2s
Annotations
171 errors and 193 warnings
nf-core-lint (subworkflows/initialise)
Process completed with exit code 1.
|
pytest (bclconvert, docker)
Process completed with exit code 1.
|
pytest (gatk4/denoisereadcounts, docker)
Process completed with exit code 1.
|
pytest (gatk4/filtervarianttranches, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 6028:43A0:3AD2099:78B4309:65118446.
|
pytest (gatk4/filtervarianttranches, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
|
pytest (gatk4/filtervarianttranches, singularity)
Process completed with exit code 1.
|
pytest (gatk4/filterintervals, singularity)
Process completed with exit code 1.
|
pytest (gatk4/filterintervals, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 3B40:6060:3B8CE0F:7A30FD7:6511840F.
|
pytest (gatk4/filterintervals, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/filterintervals, singularity)
Invalid URL
|
pytest (gatk4/filtermutectcalls, conda)
Process completed with exit code 1.
|
pytest (gatk4/filtermutectcalls, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 3018:6538:480A6D6:9323D52:65118415.
|
pytest (gatk4/filtermutectcalls, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/filtermutectcalls, conda)
Invalid URL
|
pytest (gatk4/filtermutectcalls, singularity)
Process completed with exit code 1.
|
pytest (gatk4/filtermutectcalls, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID E7C0:4A9A:CEAC09:1A8282E:65118442.
|
pytest (gatk4/filtermutectcalls, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/filtermutectcalls, singularity)
Invalid URL
|
pytest (gatk4/filterintervals, docker)
Process completed with exit code 1.
|
pytest (gatk4/filterintervals, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 3808:7559:3DBB034:7E74E50:65118401.
|
pytest (gatk4/filterintervals, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/filterintervals, docker)
Invalid URL
|
pytest (gatk4/filtervarianttranches, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 57C0:6592:13B8444:141B448:651184CF.
|
pytest (gatk4/filtervarianttranches, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/filtervarianttranches, docker)
Invalid URL
|
pytest (gatk4/filtervarianttranches, docker)
Process completed with exit code 1.
|
pytest (gatk4/gatherpileupsummaries, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 7000:07BC:62E7D7E:C9E585F:65118566.
|
pytest (gatk4/gatherpileupsummaries, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/gatherpileupsummaries, docker)
Invalid URL
|
pytest (gatk4/gatherpileupsummaries, docker)
Process completed with exit code 1.
|
pytest (gatk4/genomicsdbimport, conda)
Process completed with exit code 1.
|
pytest (gatk4/genomicsdbimport, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID C580:5615:3D0B4B2:7D28952:6511863C.
|
pytest (gatk4/genomicsdbimport, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/genomicsdbimport, conda)
Invalid URL
|
pytest (gatk4/filtervarianttranches, conda)
Process completed with exit code 1.
|
pytest (gatk4/filtervarianttranches, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 6500:5C06:3A1D2CE:775D820:651184BA.
|
pytest (gatk4/filtervarianttranches, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/filtervarianttranches, conda)
Invalid URL
|
pytest (gatk4/gatherpileupsummaries, conda)
Process completed with exit code 1.
|
pytest (gatk4/gatherpileupsummaries, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 4B80:580E:5A9A94C:B95BFAF:65118578.
|
pytest (gatk4/gatherpileupsummaries, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/gatherpileupsummaries, conda)
Invalid URL
|
pytest (gatk4/gatherpileupsummaries, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 6C00:2988:144F2C1:14B268B:6511853B.
|
pytest (gatk4/gatherpileupsummaries, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
|
pytest (gatk4/gatherpileupsummaries, singularity)
Process completed with exit code 1.
|
pytest (gatk4/filterintervals, conda)
Process completed with exit code 1.
|
pytest (gatk4/filterintervals, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 6805:5172:3E04BFE:7EE5123:651183F7.
|
pytest (gatk4/filterintervals, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/filterintervals, conda)
Invalid URL
|
pytest (gatk4/gatherbqsrreports, docker)
Process completed with exit code 1.
|
pytest (gatk4/gatherbqsrreports, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 8800:6E6F:5614491:B03E58B:651184D0.
|
pytest (gatk4/gatherbqsrreports, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/gatherbqsrreports, docker)
Invalid URL
|
pytest (gatk4/gatherbqsrreports, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 2C40:4BD2:50B1800:A5B2B2B:651184DD.
|
pytest (gatk4/gatherbqsrreports, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/gatherbqsrreports, singularity)
Invalid URL
|
pytest (gatk4/gatherbqsrreports, singularity)
Process completed with exit code 1.
|
pytest (gatk4/filtermutectcalls, docker)
Process completed with exit code 1.
|
pytest (gatk4/filtermutectcalls, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 6808:6488:54CF52C:ADFAEBA:6511842E.
|
pytest (gatk4/filtermutectcalls, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/filtermutectcalls, docker)
Invalid URL
|
pytest (gatk4/genomicsdbimport, singularity)
Process completed with exit code 1.
|
pytest (gatk4/genomicsdbimport, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID FC00:3617:524086F:A8E9716:6511867E.
|
pytest (gatk4/genomicsdbimport, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/genomicsdbimport, singularity)
Invalid URL
|
pytest (gatk4/gatherbqsrreports, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 2C08:9965:D414E2:1B2DBD1:651184D2.
|
pytest (gatk4/gatherbqsrreports, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/gatherbqsrreports, conda)
Invalid URL
|
pytest (gatk4/gatherbqsrreports, conda)
Process completed with exit code 1.
|
pytest (gatk4/genotypegvcfs, docker)
Process completed with exit code 1.
|
pytest (gatk4/genotypegvcfs, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 6BC0:0529:3E2F0CA:7F679F4:651186D4.
|
pytest (gatk4/genotypegvcfs, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/genotypegvcfs, docker)
Invalid URL
|
pytest (gatk4/genotypegvcfs, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID C028:723B:5398A6E:AB95A72:6511869E.
|
pytest (gatk4/genotypegvcfs, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/genotypegvcfs, conda)
Invalid URL
|
pytest (gatk4/genotypegvcfs, conda)
Process completed with exit code 1.
|
pytest (gatk4/genomicsdbimport, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 0400:4B8A:E15679:1CD5466:6511867A.
|
pytest (gatk4/genomicsdbimport, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/genomicsdbimport, docker)
Invalid URL
|
pytest (gatk4/genomicsdbimport, docker)
Process completed with exit code 1.
|
pytest (gatk4/mergevcfs, singularity)
Process completed with exit code 1.
|
pytest (gatk4/mergevcfs, conda)
Process completed with exit code 1.
|
pytest (gatk4/genotypegvcfs, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 0400:0E24:5B12D62:BA422E0:65118A83.
|
pytest (gatk4/genotypegvcfs, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/genotypegvcfs, singularity)
Invalid URL
|
pytest (gatk4/genotypegvcfs, singularity)
Process completed with exit code 1.
|
pytest (gatk4/getpileupsummaries, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID CC08:57F8:E68023:1D7C354:65118BB8.
|
pytest (gatk4/getpileupsummaries, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/getpileupsummaries, singularity)
Invalid URL
|
pytest (gatk4/getpileupsummaries, singularity)
Process completed with exit code 1.
|
pytest (gatk4/germlinecnvcaller, singularity)
Process completed with exit code 1.
|
pytest (gatk4/germlinecnvcaller, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 8420:440C:162A5FF:1691300:65118B64.
|
pytest (gatk4/germlinecnvcaller, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/germlinecnvcaller, singularity)
Invalid URL
|
pytest (gatk4/germlinecnvcaller, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 4080:4D2A:5DAC3CA:BF6870C:65118BAA.
|
pytest (gatk4/germlinecnvcaller, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (gatk4/germlinecnvcaller, docker)
Invalid URL
|
pytest (gatk4/germlinecnvcaller, docker)
Process completed with exit code 1.
|
pytest (ngscheckmate/vafncm, conda)
Process completed with exit code 1.
|
pytest (shinyngs/app, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 0AC0:0CD2:D0488:D4586:65119353.
|
pytest (shinyngs/app, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/app, docker)
Invalid URL
|
pytest (shinyngs/app, docker)
Process completed with exit code 1.
|
pytest (seqtk/seq, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID AC10:9A65:AF4D8:1632DF:65119327.
|
pytest (seqtk/seq, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (seqtk/seq, singularity)
Invalid URL
|
pytest (seqtk/seq, singularity)
Process completed with exit code 1.
|
pytest (seqtk/seq, conda)
Process completed with exit code 1.
|
pytest (seqtk/seq, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 77C5:021E:945E1:12C924:65119314.
|
pytest (seqtk/seq, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (seqtk/seq, conda)
Invalid URL
|
pytest (shinyngs/staticdifferential, conda)
Process completed with exit code 1.
|
pytest (shinyngs/staticdifferential, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 0BC0:6B0F:D4977:1AC9AB:65119370.
|
pytest (shinyngs/staticdifferential, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/staticdifferential, conda)
Invalid URL
|
pytest (shinyngs/app, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 4900:394F:B6011:1701B6:6511932E.
|
pytest (shinyngs/app, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/app, conda)
Invalid URL
|
pytest (shinyngs/app, conda)
Process completed with exit code 1.
|
pytest (shinyngs/staticdifferential, docker)
Process completed with exit code 1.
|
pytest (shinyngs/staticdifferential, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 0FC0:2E94:D81D9:DC508:6511939A.
|
pytest (shinyngs/staticdifferential, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/staticdifferential, docker)
Invalid URL
|
pytest (shinyngs/validatefomcomponents, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 1840:4E2B:AD839:15FB9F:6511942E.
|
pytest (shinyngs/validatefomcomponents, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/validatefomcomponents, conda)
Invalid URL
|
pytest (shinyngs/validatefomcomponents, conda)
Process completed with exit code 1.
|
pytest (shinyngs/staticexploratory, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID D808:876B:1ADC34:1B5D0B:651193C6.
|
pytest (shinyngs/staticexploratory, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/staticexploratory, singularity)
Invalid URL
|
pytest (shinyngs/staticexploratory, singularity)
Process completed with exit code 1.
|
pytest (shinyngs/app, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 97C0:11C4:DDC37:1BF56F:6511934A.
|
pytest (shinyngs/app, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/app, singularity)
Invalid URL
|
pytest (shinyngs/app, singularity)
Process completed with exit code 1.
|
pytest (subworkflows/initialise, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 7140:7F28:A5E19:150253:65119450.
|
pytest (subworkflows/initialise, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (subworkflows/initialise, docker)
Invalid URL
|
pytest (subworkflows/initialise, docker)
Process completed with exit code 1.
|
pytest (shinyngs/staticdifferential, singularity)
Process completed with exit code 1.
|
pytest (shinyngs/staticdifferential, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 2408:021E:9B5AC:13AA18:65119350.
|
pytest (shinyngs/staticdifferential, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
|
pytest (shinyngs/validatefomcomponents, docker)
Process completed with exit code 1.
|
pytest (shinyngs/validatefomcomponents, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 5818:2941:F0854:F51C2:65119445.
|
pytest (shinyngs/validatefomcomponents, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/validatefomcomponents, docker)
Invalid URL
|
pytest (shinyngs/staticexploratory, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 9808:0E17:94D6E:12E09B:651193C7.
|
pytest (shinyngs/staticexploratory, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/staticexploratory, conda)
Invalid URL
|
pytest (shinyngs/staticexploratory, conda)
Process completed with exit code 1.
|
pytest (shinyngs/staticexploratory, docker)
Process completed with exit code 1.
|
pytest (shinyngs/staticexploratory, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 0440:506E:BC27B:17D863:65119404.
|
pytest (shinyngs/staticexploratory, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (shinyngs/staticexploratory, docker)
Invalid URL
|
pytest (subworkflows/initialise, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 9600:55D8:BC987:17E685:651194B1.
|
pytest (subworkflows/initialise, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (subworkflows/initialise, conda)
Invalid URL
|
pytest (subworkflows/initialise, conda)
Process completed with exit code 1.
|
pytest (shinyngs/validatefomcomponents, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 3400:36A3:AA391:1578BA:6511942C.
|
pytest (shinyngs/validatefomcomponents, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
|
pytest (shinyngs/validatefomcomponents, singularity)
Process completed with exit code 1.
|
pytest (subworkflows/initialise, singularity)
Process completed with exit code 1.
|
pytest (subworkflows/initialise, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 22613627. If you reach out to GitHub Support for help, please include the request ID 2A80:9C0D:132839:13853A:65119659.
|
pytest (subworkflows/initialise, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
|
pytest (subworkflows/initialise, singularity)
Invalid URL
|
confirm-pass
Process completed with exit code 1.
|
pytest (bracken/bracken, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (bclconvert, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (bcl2fastq, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (controlfreec/freec, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (bclconvert, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (controlfreec/freec2circos, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (expansionhunter, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (controlfreec/freec2bed, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (controlfreec/assesssignificance, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/applybqsr, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/applyvqsr, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/asereadcounter, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (controlfreec/makegraph, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (cellranger/count, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/annotateintervals, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/bedtointervallist, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/calibratedragstrmodel, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/baserecalibrator, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/collectreadcounts, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/combinegvcfs, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/composestrtablefile, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/condensedepthevidence, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/collectsvevidence, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/createsequencedictionary, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/estimatelibrarycomplexity, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/createreadcountpanelofnormals, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/denoisereadcounts, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/denoisereadcounts, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/fastqtosam, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/applybqsrspark, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/cnnscorevariants, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/calculatecontamination, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/baserecalibratorspark, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/createsomaticpanelofnormals, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filtervarianttranches, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filtervarianttranches, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/filtervarianttranches, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filterintervals, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filterintervals, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filterintervals, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/filtermutectcalls, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filtermutectcalls, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/filtermutectcalls, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filtermutectcalls, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filtermutectcalls, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/filtermutectcalls, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filterintervals, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filterintervals, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filterintervals, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/filtervarianttranches, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filtervarianttranches, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/filtervarianttranches, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/gatherpileupsummaries, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/gatherpileupsummaries, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/gatherpileupsummaries, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/genomicsdbimport, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genomicsdbimport, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/genomicsdbimport, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filtervarianttranches, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filtervarianttranches, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filtervarianttranches, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/gatherpileupsummaries, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/gatherpileupsummaries, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/gatherpileupsummaries, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/gatherpileupsummaries, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/gatherpileupsummaries, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/gatherpileupsummaries, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filterintervals, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filterintervals, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/filterintervals, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/gatherbqsrreports, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/gatherbqsrreports, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/gatherbqsrreports, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/gatherbqsrreports, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/gatherbqsrreports, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/gatherbqsrreports, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filtermutectcalls, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/filtermutectcalls, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/filtermutectcalls, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/indexfeaturefile, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genomicsdbimport, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genomicsdbimport, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/genomicsdbimport, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/haplotypecaller, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/gatherbqsrreports, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/gatherbqsrreports, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/gatherbqsrreports, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/intervallisttobed, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/intervallisttools, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genotypegvcfs, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genotypegvcfs, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/genotypegvcfs, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/leftalignandtrimvariants, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genotypegvcfs, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genotypegvcfs, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/genotypegvcfs, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/genomicsdbimport, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genomicsdbimport, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/genomicsdbimport, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/markduplicates, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/mergebamalignment, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/mergemutectstats, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/mergevcfs, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/learnreadorientationmodel, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/preprocessintervals, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/printreads, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/mergevcfs, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/reblockgvcf, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/printsvevidence, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/samtofastq, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/revertsam, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/markduplicatesspark, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/selectvariants, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/shiftfasta, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/sitedepthtobaf, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/splitcram, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/splitintervals, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/splitncigarreads, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/svcluster, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/svannotate, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genotypegvcfs, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/genotypegvcfs, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/genotypegvcfs, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/variantrecalibrator, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/variantfiltration, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gem3/gem3indexer, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (ngscheckmate/patterngenerator, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/getpileupsummaries, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/getpileupsummaries, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/getpileupsummaries, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (ngscheckmate/fastq, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (ngscheckmate/vafncm, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/germlinecnvcaller, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/germlinecnvcaller, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/germlinecnvcaller, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (learnmsa/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/germlinecnvcaller, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/germlinecnvcaller, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (gatk4/germlinecnvcaller, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (ngscheckmate/vafncm, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (gatk4/postprocessgermlinecnvcalls, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/app, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/app, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/app, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (seqtk/seq, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (seqtk/seq, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (seqtk/seq, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (seqtk/seq, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (seqtk/seq, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (seqtk/seq, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/staticdifferential, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/staticdifferential, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/staticdifferential, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/app, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/app, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/app, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/staticdifferential, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/staticdifferential, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/staticdifferential, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/validatefomcomponents, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/validatefomcomponents, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/validatefomcomponents, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/staticexploratory, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/staticexploratory, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/staticexploratory, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/app, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/app, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/app, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (subworkflows/initialise, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (subworkflows/initialise, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (subworkflows/initialise, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/staticdifferential, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/staticdifferential, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/staticdifferential, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/validatefomcomponents, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/validatefomcomponents, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/validatefomcomponents, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/staticexploratory, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/staticexploratory, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (shinyngs/staticexploratory, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/staticexploratory, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/staticexploratory, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/staticexploratory, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (subworkflows/initialise, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (subworkflows/initialise, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (subworkflows/initialise, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/validatefomcomponents, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (shinyngs/validatefomcomponents, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (shinyngs/validatefomcomponents, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
pytest (gatk4/mutect2, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (subworkflows/initialise, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
pytest (subworkflows/initialise, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
pytest (subworkflows/initialise, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
|
Artifacts
Produced during runtime
Name | Size | |
---|---|---|
logs-conda-
Expired
|
119 MB |
|
logs-docker-
Expired
|
601 MB |
|
logs-singularity-
Expired
|
1.27 MB |
|