Merge branch 'master' into master

WackerO · Nov 15, 2023 · bb66f6f · bb66f6f
2 parents 70444b9 + 193b090
commit bb66f6f
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Showing 3 changed files with 10 additions and 12 deletions.
diff --git a/modules/nf-core/mitohifi/findmitoreference/environment.yml b/modules/nf-core/mitohifi/findmitoreference/environment.yml
diff --git a/modules/nf-core/mitohifi/findmitoreference/main.nf b/modules/nf-core/mitohifi/findmitoreference/main.nf
@@ -1,17 +1,17 @@
 process MITOHIFI_FINDMITOREFERENCE {
     tag "$species"
-    label 'process_low'
+    label 'process_single'
 
     // Docker image available at the project github repository
     container 'ghcr.io/marcelauliano/mitohifi:master'
 
     input:
-    val species
+    tuple val(meta), val(species)
 
     output:
-    path "*.fasta",                 emit: fasta
-    path "*.gb",                    emit: gb
-    path "versions.yml",            emit: versions
+    tuple val(meta), path("*.fasta"), emit: fasta
+    tuple val(meta), path("*.gb")   , emit: gb
+    path "versions.yml"             , emit: versions
 
     when:
     task.ext.when == null || task.ext.when

diff --git a/tests/modules/nf-core/mitohifi/findmitoreference/main.nf b/tests/modules/nf-core/mitohifi/findmitoreference/main.nf
@@ -6,7 +6,10 @@ include { MITOHIFI_FINDMITOREFERENCE } from '../../../../../modules/nf-core/mito
 
 workflow test_mitohifi_findmitoreference {
 
-    species = "Phalera flavescens"
+    input = [
+        [ id:'test' ],       // meta map
+        "Phalera flavescens" // species
+    ]
 
-    MITOHIFI_FINDMITOREFERENCE ( species )
+    MITOHIFI_FINDMITOREFERENCE ( input )
 }