Added na.rm to matrixfilter

WackerO · Sep 25, 2023 · ecf482f · ecf482f
1 parent 9ee90ee
commit ecf482f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nf-core/custom/matrixfilter/templates/matrixfilter.R b/modules/nf-core/custom/matrixfilter/templates/matrixfilter.R
@@ -155,7 +155,7 @@ if ((opt\$sample_file != '') && ( ! is.null(opt\$grouping_variable))){
 # Generate a boolean vector specifying the features to retain
 
 keep <- apply(abundance_matrix, 1, function(x){
-    sum(x > opt\$minimum_abundance) >= opt\$minimum_samples
+    sum(x > opt\$minimum_abundance, na.rm = TRUE) >= opt\$minimum_samples
 })
 
 # Write out the matrix retaining the specified rows and re-prepending the