wsi-pro

wsi image processing pipeline

Ownership

Wang Lab at HKUST

Status

Active Development

Introduction

This is our wsi image processing pipeline to make it easier for researchers to use on their datasets.

There are four major parts:

1. pre-processing
2. data augmentation
3. data loading
4. post-processing.

Dependencies

1. Preprocssing functions are a fork of Deron Eriksson's python-wsi-preprocessing code:
   original project: https://github.com/deroneriksson/python-wsi-preprocessing
   In our fork, we have added some features to allow for more general use cases:
   our fork: https://github.com/mingrui/python-wsi-preprocessing

2. We are a contributor to the py-wsi project, this tool is used to standardize data loading:
   original project: https://github.com/ysbecca/py-wsi
   In our fork, we have added more features:
   our fork: https://github.com/mingrui/py-wsi

Contact

For technical questions, please contact Mingrui via email: [email protected]