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update
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@ritikarawlani
ritikarawlani committed Aug 6, 2024
1 parent e320344 commit 48a7e53
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Showing 2 changed files with 62 additions and 12 deletions.
25 changes: 17 additions & 8 deletions input/fsh/examples/ICVP123455.fsh
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Original file line number Diff line number Diff line change
Expand Up @@ -7,12 +7,21 @@ Usage: #example
* dob = "2023-02-04"
* sex = #female
* nationality = #IND
* vaccineDetails.disease.display = "Yellow fever"
* vaccineDetails.vaccineClassification.text = "YF"
* vaccineDetails.date = "2024-01-23"
* vaccineDetails.clinicianName = "DR A"
* vaccineDetails.manufacturer = "PFIZER"
* vaccineDetails.batchNo = "12345"
* vaccineDetails.validityPeriod.start = "2024-01-31"
* vaccineDetails.doseNumber.text = "first"
* vaccineDetails[0].disease.display = "Yellow fever"
* vaccineDetails[=].vaccineClassification.text = "YF"
* vaccineDetails[=].date = "2024-01-23"
* vaccineDetails[=].clinicianName = "DR A"
* vaccineDetails[=].manufacturer = "PFIZER"
* vaccineDetails[=].batchNo = "12345"
* vaccineDetails[=].validityPeriod.start = "2024-01-31"
* vaccineDetails[=].doseNumber.text = "first"
* vaccineDetails[+].disease.display = "Yellow fever"
* vaccineDetails[=].vaccineClassification.text = "YF"
* vaccineDetails[=].date = "2024-05-23"
* vaccineDetails[=].clinicianName = "DR A"
* vaccineDetails[=].manufacturer = "PFIZER"
* vaccineDetails[=].batchNo = "67890"
* vaccineDetails[=].validityPeriod.start = "2024-05-31"
* vaccineDetails[=].doseNumber.text = "second"


49 changes: 45 additions & 4 deletions input/maps/IcvpLMToIPS.map
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Original file line number Diff line number Diff line change
Expand Up @@ -7,10 +7,10 @@ uses "http://hl7.org/fhir/StructureDefinition/Bundle" alias IPS as target
group IcvpLMToIPS(source lm : ICVPLogicalModel, target ips : IPS) {
lm -> ips.type = 'document' "set ips type";
lm -> uuid() as bid, ips.id = bid "set id";
lm -> (now()) as timestamp,uuid() as cid, uuid() as pid, uuid() as prid, uuid() as oid then {
lm -> (now()) as timestamp,uuid() as cid, uuid() as pid, uuid() as prid, uuid() as oid, uuid() as mid, uuid() as aid, uuid() as proid, uuid() as immid then {
lm -> ips.timestamp = timestamp "set timestamp";
lm -> ips.entry as entry, entry.resource = create('Composition') as composition, entry.fullUrl = append('urn:uuid:', cid) then {
lm -> lm then LmToComposition(lm, composition, timestamp,cid, pid, prid, oid ) "set";
lm -> lm then LmToComposition(lm, composition, timestamp,cid, pid, prid, oid, mid, aid, proid, immid ) "set";
lm -> ips.entry as entry, entry.fullUrl = append('urn:uuid:', pid), create('Patient') as patient then {
lm -> lm then DemographicsToPatient(lm, patient, pid) "create patient";
lm -> entry.resource = patient "set patient as entry";
Expand All @@ -28,7 +28,7 @@ group IcvpLMToIPS(source lm : ICVPLogicalModel, target ips : IPS) {
}

// create Composition
group LmToComposition(source lm : ICVPLogicalModel, target composition : Composition,source timestamp, source cid, source pid, source prid, source oid) {
group LmToComposition(source lm : ICVPLogicalModel, target composition : Composition,source timestamp, source cid, source pid, source prid, source oid, source mid, source aid, source proid, source immid) {
cid -> composition.id = cid "set id";
lm -> composition.status = "final" "set status";
timestamp -> composition.date = timestamp "set composition date";
Expand All @@ -37,6 +37,10 @@ group LmToComposition(source lm : ICVPLogicalModel, target composition : Composi
lm -> composition.subject as subject then {
lm -> subject.reference= append('Patient/',pid) "set subject";
} "set subject";
lm -> composition.section as medication then createSectionMedications(lm, medication, mid) "create medication";
lm -> composition.section as allergies then createSectionAllergies(lm, allergies, aid) "create allergies";
lm -> composition.section as problems then createSectionProblems(lm, problems, proid) "create problems";
lm then createSectionImmunizations(lm, ips, composition, immid, pid) "create immunizations";
}

// create Patient
Expand All @@ -61,14 +65,51 @@ group createSectionMedications(source lm:ICVPLogicalModel, target med : Backbone
mid -> med.id = mid "set medication id";
lm -> med.title = "Medication Summary Section" "set medication title";
lm -> create('Coding') as coding, coding.code = "10160-0", coding.system = "http://loinc.org", create('CodeableConcept') as code, code.coding = coding, med.code = code "set code";

lm -> create('Coding') as coding, coding.code = "unavailable", coding.system = "http://hl7.org/fhir/ValueSet/list-empty-reason", create('CodeableConcept') as code, code.coding = coding, med.emptyReason = code "set code";
}

// create sectionAllergies
group createSectionAllergies(source lm:ICVPLogicalModel, target all : BackboneElement, source aid ) {
aid -> all.id = aid "set allergy id";
lm -> all.title = "Allergies Section" "set allergy title";
lm -> create('Coding') as coding, coding.code = "48765-2", coding.system = "http://loinc.org", create('CodeableConcept') as code, code.coding = coding, all.code = code "set code";
lm -> create('Coding') as coding, coding.code = "unavailable", coding.system = "http://hl7.org/fhir/ValueSet/list-empty-reason", create('CodeableConcept') as code, code.coding = coding, all.emptyReason = code "set code";
}

// create sectionProblems
group createSectionProblems(source lm:ICVPLogicalModel, target prb : BackboneElement, source proid ) {
proid -> prb.id = proid "set problems id";
lm -> prb.title = "Problems Section" "set problem title";
lm -> create('Coding') as coding, coding.code = "11450-4", coding.system = "http://loinc.org", create('CodeableConcept') as code, code.coding = coding, prb.code = code "set code";
lm -> create('Coding') as coding, coding.code = "unavailable", coding.system = "http://hl7.org/fhir/ValueSet/list-empty-reason", create('CodeableConcept') as code, code.coding = coding, prb.emptyReason = code "set code";
}

// create sectionImmunizations
group createSectionImmunizations(source lm:ICVPLogicalModel, target bundle: Bundle, target composition: Composition, source immid, source pid ) {
lm -> composition.section as imm then {
immid -> imm.id = immid "set immunizations id";
lm -> imm.title = "Immunizations Section" "set Immunization title";
lm -> create('Coding') as coding, coding.code = "11369-6", coding.system = "http://loinc.org", create('CodeableConcept') as code, code.coding = coding, imm.code = code "set code";
lm.vaccineDetails as vax -> uuid() as id, bundle.entry as entry, entry.fullUrl = append('urn:uuid:', id), imm.entry as sectionEntry, sectionEntry.reference = append('Immunization/', id), entry.resource = create('Immunization') as immunization then createImmunizationResource(vax, bundle, immunization, pid ) "set immz";
}
}

group createImmunizationResource (source vax : vaccineDetails, target immunization : Immunization, source pid) {
vax -> immunization.id = id "set id";
vax -> immunization.status = "completed" "set status";
vax.vaccineClassification as vaccine -> immunization.vaccineCode = vaccine "set vaccine code";
vax.date as date -> immunization.occurenceDateTime = date "set date";
vax.batchNo as batchNo -> immunization.lotNumber = batchNo "set batchNo";
vax -> immunization.protocolApplied as protocol then {
vax.doseNumber as doseNo then {
doseNo.display as text -> protocol.doseNumberString = text "set dose No";
}
vax.disease as disease -> create('Coding') as coding, coding = disease, create('CodeableConcept') as code, code.coding = coding, protocol.targetDisease = code "set target disease";
} "set protocol applied";
vax -> immunization.patient as subject, subject.reference = append('Patient/',pid) "set subject";

}

//helper function
group humanNameToHumanName (source sourceName, target targetName: HumanName) {
sourceName.use as use -> targetName.use = use "Copy use";
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