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Deprecate the usage of XENONnT/ax_env (#345) #930

Deprecate the usage of XENONnT/ax_env (#345)

Deprecate the usage of XENONnT/ax_env (#345) #930

Workflow file for this run

# Test straxen on each PR.
# We run three types of tests:
# - Pytest -> these are the "normal" tests and should be run for all
# python versions
# - Coveralls -> this is to see if we are coverering all our lines of
# code with our tests. The results get uploaded to
# coveralls.io/github/XENONnT/straxen
# - pytest_no_database -> we want to make sure we can run the tests even
# if we don't have access to our datebase since this will e.g. happen
# when someone is pushing a PR from their own fork as we don't
# propagate our secrets there.
name: Test package
# Trigger this code when a new release is published
on:
workflow_dispatch:
release:
types: [ created ]
pull_request:
push:
branches:
- master
jobs:
update:
name: "${{ matrix.test }}_py${{ matrix.python-version }}"
runs-on: ubuntu-latest
strategy:
fail-fast: False
matrix:
python-version: [ "3.9", "3.10" ]
test: [ 'coveralls', 'pytest', 'pytest_no_database' ]
# Only run coverage / no_database on py3.8
exclude:
# - python-version: "3.10"
# test: coveralls
# - python-version: "3.11"
# test: coveralls
- python-version: "3.10"
test: pytest_no_database
env:
HAVE_ACCESS_TO_SECRETS: ${{ secrets.RUNDB_API_URL }}
steps:
# Setup and installation
- name: Setup python
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Checkout repo
uses: actions/checkout@v3
- name: Install requirements for tests and latest strax
run: |
pip install -r extra_requirements/requirements-tests.txt
python setup.py develop
# Secrets and required files
- name: patch utilix file
# Patch this file if we want to have access to the database
if: matrix.test != 'pytest_no_database'
run: bash .github/scripts/create_readonly_utilix_config.sh
env:
# RunDB
RUNDB_API_URL: ${{ secrets.RUNDB_API_URL }}
RUNDB_API_USER_READONLY: ${{ secrets.RUNDB_API_USER_READONLY }}
RUNDB_API_PASSWORD_READONLY: ${{ secrets.RUNDB_API_PASSWORD_READONLY}}
PYMONGO_URL: ${{ secrets.PYMONGO_URL }}
PYMONGO_USER: ${{ secrets.PYMONGO_USER }}
PYMONGO_PASSWORD: ${{ secrets.PYMONGO_PASSWORD }}
PYMONGO_DATABASE: ${{ secrets.PYMONGO_DATABASE }}
# SCADA
SCADA_URL: ${{ secrets.SCADA_URL }}
SCADA_VALUE_URL: ${{ secrets.SCADA_VALUE_URL }}
SCADA_USER: ${{ secrets.SCADA_USER }}
SCADA_LOGIN_URL: ${{ secrets.SCADA_LOGIN_URL }}
SCADA_PWD: ${{ secrets.SCADA_PWD }}
- name: Create pre-apply function file
# In case we do not have database. We need to make a local file for
# The pre_apply_function (see #559).
if: env.HAVE_ACCESS_TO_SECRETS == null || matrix.test == 'pytest_no_database'
run: |
bash .github/scripts/create_pre_apply_function.sh $HOME
# Run tests
- name: Test package
# This is running a normal test
if: matrix.test == 'pytest_no_database' || matrix.test == 'pytest'
run: |
coverage run --source=pema -m pytest -vs --log-level=DEBUG --durations 0
- name: Coveralls
# Make the coverage report and upload
env:
NUMBA_DISABLE_JIT: 1
if: matrix.test == 'coveralls' && env.HAVE_ACCESS_TO_SECRETS != null
run: |
pytest --cov pema -v --nbmake notebooks/Getting_started_with_Pema.ipynb --durations 0 --nb-coverage --nbmake-timeout=3600
pytest --cov pema --cov-append -v --durations 0
- name: Coveralls
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
if: matrix.test != 'pytest_no_database' && env.HAVE_ACCESS_TO_SECRETS != null
run: coveralls --service=github
# Done
- name: goodbye
run: echo "tests done, bye bye"