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Minor bug fix for cutax installation #84

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merged 2 commits into from
Feb 26, 2024
Merged

Minor bug fix for cutax installation #84

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838523b
Minor bug fix for cutax installation
dachengx Feb 26, 2024
f2ea002
Remove unnecessary bind
dachengx Feb 26, 2024
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9 changes: 4 additions & 5 deletions utilix/batchq.py
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Original file line number Diff line number Diff line change
Expand Up @@ -171,13 +171,12 @@ def submit_job(jobstring,
jobstring = singularity_wrap(jobstring, container, bind, partition)

# if you have exported INSTALL_CUTAX to be 1, then you do NOT need to unset CUTAX_LOCATION
if os.environ.get('INSTALL_CUTAX') == '1':
print("You have exported INSTALL_CUTAX to be 1, so I will unset it for you")
print("Your CUTAX_LOCATION is %s"%(os.environ.get('CUTAX_LOCATION')))
print("Your current CUTAX_LOCATION is %s"%(os.environ.get('CUTAX_LOCATION')))
if os.environ.get('INSTALL_CUTAX') != '1':
print("You have NOT exported INSTALL_CUTAX to be 1, so I will not unset CUTAX_LOCATION.")
jobstring = 'unset X509_CERT_DIR\n' + 'module load singularity\n' + jobstring
else:
print("You have NOT exported INSTALL_CUTAX to be 1, so I will unset CUTAX_LOCATION for you")
print("Your CUTAX_LOCATION is %s"%(os.environ.get('CUTAX_LOCATION')))
print("You have exported INSTALL_CUTAX to be 1, so I will unset CUTAX_LOCATION for you.")
jobstring = 'unset X509_CERT_DIR CUTAX_LOCATION\n' + 'module load singularity\n' + jobstring

if not hours is None:
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