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Commits on May 16, 2020

  1. Fix for #77 

    Also, some documentation fixes (use accessor methods)
    @deto
    deto committed May 16, 2020
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  2. Merge pull request #79 from YosefLab/staging 

    Fix for #77
    @deto
    deto authored May 16, 2020
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Commits on Oct 20, 2020

  1. sparse gene importance bug fix

    Matthew Jones authored and Matthew Jones committed Oct 20, 2020
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Commits on Oct 21, 2020

  1. color scale to red for gene expression

    Matthew Jones authored and Matthew Jones committed Oct 21, 2020
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  2. color scale for gene expr from gray to red

    Matthew Jones authored and Matthew Jones committed Oct 21, 2020
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Commits on Nov 15, 2020

  1. sig overflow

    @Yanay1
    Yanay1 committed Nov 15, 2020
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  2. Merge branch 'yr-cass' of https://github.com/YosefLab/VISION into yr-… 

    …cass
    @Yanay1
    Yanay1 committed Nov 15, 2020
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Commits on Dec 9, 2020

  1. layout for no dend changes

    @Yanay1
    Yanay1 committed Dec 9, 2020
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  2. layout for no dend changes

    @Yanay1
    Yanay1 committed Dec 9, 2020
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  3. layout for no dend changes

    @Yanay1
    Yanay1 committed Dec 9, 2020
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Commits on Jan 20, 2021

  1. modules fix

    @Yanay1
    Yanay1 committed Jan 20, 2021
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  2. merged changes

    @Yanay1
    Yanay1 committed Jan 20, 2021
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  3. merged changes

    @Yanay1
    Yanay1 committed Jan 20, 2021
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Commits on Jan 26, 2021

  1. small layout changes

    @Yanay1
    Yanay1 committed Jan 26, 2021
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  2. broke apart fdr args

    @Yanay1
    Yanay1 committed Jan 26, 2021
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Commits on Jan 27, 2021

  1. down reg overlap option

    @Yanay1
    Yanay1 committed Jan 27, 2021
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Commits on Jan 28, 2021

  1. added pyhlo line selection

    @Yanay1
    Yanay1 committed Jan 28, 2021
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Commits on Feb 10, 2021

  1. loading in hotspot object and saving hotspot object fix

    @Yanay1
    Yanay1 committed Feb 10, 2021
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  2. loading in hotspot object and saving hotspot object fix

    @Yanay1
    Yanay1 committed Feb 10, 2021
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  3. loading in hotspot object and saving hotspot object fix

    @Yanay1
    Yanay1 committed Feb 10, 2021
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Commits on Feb 15, 2021

  1. loading in hotspot object and saving hotspot object fix

    @Yanay1
    Yanay1 committed Feb 15, 2021
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Commits on Mar 9, 2021

  1. lca updates wip

    @Yanay1
    Yanay1 committed Mar 9, 2021
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  2. updated some imports; removed mandatory upper case gene names

    Matthew Jones authored and Matthew Jones committed Mar 9, 2021
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  3. Merge branch 'yr-cass' of https://github.com/YosefLab/VISION into yr-… 

    …cass
    Matthew Jones authored and Matthew Jones committed Mar 9, 2021
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Commits on Mar 24, 2021

  1. code clean up and trying new tree cluster

    @Yanay1
    Yanay1 committed Mar 24, 2021
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Commits on Mar 30, 2021

  1. code clean up and trying new tree cluster

    @Yanay1
    Yanay1 committed Mar 30, 2021
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  2. code clean up and trying new tree cluster

    @Yanay1
    Yanay1 committed Mar 30, 2021
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  3. code clean up and trying new tree cluster

    @Yanay1
    Yanay1 committed Mar 30, 2021
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Commits on Mar 31, 2021

  1. code clean up and trying new tree cluster

    @Yanay1
    Yanay1 committed Mar 31, 2021
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Commits on Apr 1, 2021

  1. code clean up and trying new tree cluster

    @Yanay1
    Yanay1 committed Apr 1, 2021
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Commits on Apr 7, 2021

  1. Added vignettes

    @Yanay1
    Yanay1 committed Apr 7, 2021
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Commits on Apr 28, 2021

  1. updating vignettes

    @Yanay1
    Yanay1 committed Apr 28, 2021
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Commits on May 2, 2021

  1. Adding server API documentation

    @deto
    deto committed May 2, 2021
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  2. Merge pull request #95 from YosefLab/staging 

    Adding server API documentation
    @deto
    deto authored May 2, 2021
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Commits on May 5, 2021

  1. updating vignettes

    @Yanay1
    Yanay1 committed May 5, 2021
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  2. updating vignettes

    @Yanay1
    Yanay1 committed May 5, 2021
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Commits on May 11, 2021

  1. updated lodash to 4.17.21

    Matthew Jones authored and Matthew Jones committed May 11, 2021
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Commits on May 19, 2021

  1. updating namespace

    @Yanay1
    Yanay1 committed May 19, 2021
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Commits on May 23, 2021

  1. updating vignettes pathing

    @Yanay1
    Yanay1 committed May 23, 2021
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Commits on Jun 8, 2021

  1. updating vignettes

    @Yanay1
    Yanay1 committed Jun 8, 2021
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  2. adding spatial data

    @Yanay1
    Yanay1 committed Jun 8, 2021
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  3. adding embryo data

    @Yanay1
    Yanay1 committed Jun 8, 2021
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  4. adding embryo data

    @Yanay1
    Yanay1 committed Jun 8, 2021
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  5. updating main

    @Yanay1
    Yanay1 committed Jun 8, 2021
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  6. updating upper left

    @Yanay1
    Yanay1 committed Jun 8, 2021
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  7. updating modules

    @Yanay1
    Yanay1 committed Jun 8, 2021
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  8. updating vision methods and all classes

    @Yanay1
    Yanay1 committed Jun 8, 2021
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Commits on Jun 10, 2021

  1. Updating heatmap

    @Yanay1
    Yanay1 committed Jun 10, 2021
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  2. renamed pv.rmd

    @Yanay1
    Yanay1 committed Jun 10, 2021
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  3. updating docs

    @Yanay1
    Yanay1 committed Jun 10, 2021
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Commits on Jun 11, 2021

  1. updating docs

    @Yanay1
    Yanay1 committed Jun 11, 2021
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Commits on Jun 15, 2021

  1. updating docs

    @Yanay1
    Yanay1 committed Jun 15, 2021
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  2. Merge pull request #93 from YosefLab/yr-tree_knn_lca 

    Merging into staging!
    @Yanay1
    Yanay1 authored Jun 15, 2021
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Commits on Jun 17, 2021

  1. updating vignettes

    @Yanay1
    Yanay1 committed Jun 17, 2021
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  2. updating vignettes

    @Yanay1
    Yanay1 committed Jun 17, 2021
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  3. updating news

    @Yanay1
    Yanay1 committed Jun 17, 2021
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  4. cleaning up phyloplotly

    @Yanay1
    Yanay1 committed Jun 17, 2021
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  5. adding imports to vignettes

    @Yanay1
    Yanay1 committed Jun 17, 2021
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Commits on Jul 27, 2021

  1. fixed whitelist and overflow

    @Yanay1
    Yanay1 committed Jul 27, 2021
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Commits on Aug 16, 2021

  1. updating docs

    @Yanay1
    Yanay1 committed Aug 16, 2021
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Commits on Aug 19, 2021

  1. release changes

    @Yanay1
    Yanay1 committed Aug 19, 2021
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  2. modified subset tree

    @Yanay1
    Yanay1 committed Aug 19, 2021
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Commits on Aug 26, 2021

  1. updated phylovision rmd

    Matthew Jones authored and Matthew Jones committed Aug 26, 2021
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Commits on Aug 27, 2021

  1. updated Hotspot spatial vignette

    Matthew Jones authored and Matthew Jones committed Aug 27, 2021
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  2. updated Hotspot spatial vignette

    Matthew Jones authored and Matthew Jones committed Aug 27, 2021
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  3. updated spatial hotspot vignette

    Matt Jones authored and Matt Jones committed Aug 27, 2021
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Commits on Aug 30, 2021

  1. added small changes suggested

    Matt Jones authored and Matt Jones committed Aug 30, 2021
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  2. Merge branch 'master' into yr-cass

    @Yanay1
    Yanay1 authored Aug 30, 2021
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  3. updating docs

    @Yanay1
    Yanay1 committed Aug 30, 2021
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  4. added the api doc

    @Yanay1
    Yanay1 committed Aug 30, 2021
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