Skip to content
@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


Research Interest

Microecological Analysis and Intervention

Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677).

Bioinformaitcs tool development

The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data.

Links

Pinned Loading

  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1k 256

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 839 173

  3. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 224 74

  4. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 182 37

  5. ProjectYulab ProjectYulab Public

    ⏭️ Small coding tasks that enable you to participate in our development

    33 3

  6. plotbb plotbb Public

    🖌️ Grammar of Graphics for base plot

    R 52 7

Repositories

Showing 10 of 94 repositories
  • yulab.utils Public

    Miscellaneous functions commonly used by 'YuLab-SMU'.

    YuLab-SMU/yulab.utils’s past year of commit activity
    R 31 10 0 0 Updated Nov 7, 2024
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 1,019 256 324 1 Updated Nov 7, 2024
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot’s past year of commit activity
    R 232 65 109 0 Updated Nov 6, 2024
  • ggtangle Public

    Draw Network with Data

    YuLab-SMU/ggtangle’s past year of commit activity
    R 7 0 0 0 Updated Nov 6, 2024
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 12 4 0 0 Updated Nov 6, 2024
  • SVP Public
    YuLab-SMU/SVP’s past year of commit activity
    R 5 GPL-3.0 0 0 0 Updated Nov 4, 2024
  • ggtreeExtra Public

    🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

    YuLab-SMU/ggtreeExtra’s past year of commit activity
    R 87 GPL-3.0 15 11 0 Updated Nov 4, 2024
  • MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    YuLab-SMU/MicrobiotaProcess’s past year of commit activity
    R 182 37 84 0 Updated Nov 4, 2024
  • seqcombo Public

    Visualization tool for genetic reassortment

    YuLab-SMU/seqcombo’s past year of commit activity
    R 21 7 1 0 Updated Oct 30, 2024
  • meshes Public

    🩺 MeSH Enrichment and Semantic analyses

    YuLab-SMU/meshes’s past year of commit activity
    R 11 4 2 1 Updated Oct 30, 2024

Top languages

Loading…

Most used topics

Loading…