-
Notifications
You must be signed in to change notification settings - Fork 0
/
NAMESPACE
150 lines (149 loc) · 4.25 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
# Generated by roxygen2: do not edit by hand
export("fscoreDf<-")
export("fscoreDfNames<-")
export("fscoreDfs<-")
export("gsvaExp<-")
export("gsvaExpNames<-")
export("gsvaExps<-")
export("imgData<-")
export("mainGsvaExpName<-")
export("spatialCoords<-")
export("spatialCoordsNames<-")
export("svDf<-")
export("svDfNames<-")
export("svDfs<-")
export(LISAResult)
export(LISAsce)
export(SVPExperiment)
export(as_tbl_df)
export(cal_lisa_f1)
export(cluster.assign)
export(extract_weight_adj)
export(fast_cor)
export(fscoreDf)
export(fscoreDfNames)
export(fscoreDfs)
export(gsvaExp)
export(gsvaExpNames)
export(gsvaExps)
export(imgData)
export(mainGsvaExpName)
export(pred.cell.signature)
export(runCORR)
export(runDetectMarker)
export(runDetectSVG)
export(runENCODE)
export(runGLOBALBV)
export(runKldSVG)
export(runLISA)
export(runLOCALBV)
export(runMCA)
export(runSGSA)
export(runWKDE)
export(spatialCoords)
export(spatialCoordsNames)
export(svDf)
export(svDfNames)
export(svDfs)
exportClasses(SVPExperiment)
exportMethods("fscoreDf<-")
exportMethods("fscoreDfNames<-")
exportMethods("fscoreDfs<-")
exportMethods("gsvaExp<-")
exportMethods("gsvaExpNames<-")
exportMethods("gsvaExps<-")
exportMethods("imgData<-")
exportMethods("mainGsvaExpName<-")
exportMethods("spatialCoords<-")
exportMethods("spatialCoordsNames<-")
exportMethods("svDf<-")
exportMethods("svDfNames<-")
exportMethods("svDfs<-")
exportMethods(coerce)
exportMethods(fscoreDf)
exportMethods(fscoreDfNames)
exportMethods(fscoreDfs)
exportMethods(gsvaExp)
exportMethods(gsvaExpNames)
exportMethods(gsvaExps)
exportMethods(imgData)
exportMethods(mainGsvaExpName)
exportMethods(show)
exportMethods(spatialCoords)
exportMethods(spatialCoordsNames)
exportMethods(svDf)
exportMethods(svDfNames)
exportMethods(svDfs)
import(SummarizedExperiment)
import(methods)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(BiocGenerics,updateObject)
importFrom(BiocNeighbors,findKmknn)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(DelayedMatrixStats,rowVars)
importFrom(Matrix,Matrix)
importFrom(Matrix,sparseMatrix)
importFrom(Rcpp,evalCpp)
importFrom(Rcpp,sourceCpp)
importFrom(RcppParallel,RcppParallelLibs)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,coolcat)
importFrom(S4Vectors,endoapply)
importFrom(S4Vectors,isEmpty)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"int_colData<-")
importFrom(SingleCellExperiment,"int_elementMetadata<-")
importFrom(SingleCellExperiment,"int_metadata<-")
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,"reducedDims<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,int_colData)
importFrom(SingleCellExperiment,int_elementMetadata)
importFrom(SingleCellExperiment,int_metadata)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SingleCellExperiment,reducedDims)
importFrom(SpatialExperiment,"imgData<-")
importFrom(SpatialExperiment,"spatialCoords<-")
importFrom(SpatialExperiment,"spatialCoordsNames<-")
importFrom(SpatialExperiment,SpatialExperiment)
importFrom(SpatialExperiment,imgData)
importFrom(SpatialExperiment,spatialCoords)
importFrom(SpatialExperiment,spatialCoordsNames)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(cli,cli_abort)
importFrom(deldir,deldir)
importFrom(fastmatch,"%fin%")
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,initialize)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setClassUnion)
importFrom(methods,show)
importFrom(pracma,tic)
importFrom(pracma,toc)
importFrom(rlang,.data)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,pnorm)
importFrom(stats,pt)
importFrom(stats,setNames)
importFrom(utils,combn)
importFrom(withr,with_seed)
useDynLib(SVP)