Makefile

PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGSRC  := $(shell basename `pwd`)

all: rd check clean

alldocs: rd readme

rd:
	Rscript -e 'library(methods); devtools::document()'

readme:
	Rscript -e 'rmarkdown::render("README.Rmd", encoding="UTF-8")'

build:
	cd ..;\
	R CMD build $(PKGSRC)

build2:
	cd ..;\
	R CMD build --no-build-vignettes $(PKGSRC)

install:
	cd ..;\
	R CMD INSTALL $(PKGNAME)_$(PKGVERS).tar.gz

check: rd build
	cd ..;\
	Rscript -e "rcmdcheck::rcmdcheck('$(PKGNAME)_$(PKGVERS).tar.gz')"

check2: rd build
	cd ..;\
	R CMD check $(PKGNAME)_$(PKGVERS).tar.gz

check3: rd build2
	cd ..;\
	R CMD check --ignore-vignettes $(PKGNAME)_$(PKGVERS).tar.gz

bioccheck:
	cd ..;\
	Rscript -e "BiocCheck::BiocCheck('$(PKGNAME)_$(PKGVERS).tar.gz')"

clean:
	cd ..;\
	$(RM) -r $(PKGNAME).Rcheck/

clean2:
	cd ..;\
	$(RM) -r $(PKGNAME)_$(PKGVERS).tar.gz

bignore:
	Rscript -e 'usethis::use_build_ignore(c("Makefile", "README.md", "README.Rmd", "CONDUCT.md", ".Rproj.user", ".Rproj"))'

gignore:
	Rscript -e 'usethis::use_git_ignore(c(".DS_Store", ".RData", ".Rhistory", ".Rproj.user"))'